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13th IEEE International Conference on BioInformatics and BioEngineering

Nov. 8 2000 to Nov. 10 2000

Arlilngton, Virginia

ISBN: 0-7695-0862-6

Table of Contents

Proceedings IEEE International Symposium on Bio-Informatics and Biomedical EngineeringFreely available from IEEE.pp. iii-iii
ForewordFreely available from IEEE.pp. x
Symposium Organizing CommitteesFreely available from IEEE.pp. xi
BI Session 1: Interoperability of Genome Databases, Chair: H. Jamil
Integrating life sciences data-with a little GarlicFull-text access may be available. Sign in or learn about subscription options.pp. 5
by L.M. Haas, P. Kodali, J.E. Rice, P.M. Schwarz, W.C. Swope
BI Session 1: Interoperability of Genome Databases, Chair: H. Jamil
A schema-based approach to building a bioinformatics database federationFull-text access may be available. Sign in or learn about subscription options.pp. 13
by G.J.L. Kemp, N. Angelopoulos, P.M.D. Gray
BI Session 1: Interoperability of Genome Databases, Chair: H. Jamil
Kleisli: Its Exchange Format, Supporting Tools, and an Application in Protein Interaction ExtractionFull-text access may be available. Sign in or learn about subscription options.pp. 21
by Limsoon Wong
BI Session 1: Interoperability of Genome Databases, Chair: H. Jamil
Mouse Genome Informatics in a New Age of Biological InquiryFull-text access may be available. Sign in or learn about subscription options.pp. 29
by C.J. Bult, J.E. Richardson, J.A. Blake, J.A. Kadin, M. Ringwald, J.T. Eppig, R.M. Baldarelli, M. Baya, J.S. Beal, D.A. Begley, W.J. Boddy, D.W. Bradt, N.E. Butler, T. Chu, L.E. Corbani, J. Corradi, M.T. Davisson, D. Garippa, L.H. Glass, P.L. Grant, D.P. Hill, B.L. King, D.M. Krupke, M. Lennon-Pierce, C.M. Lutz, L.J. Maltais, P. Mani, I. McCright, L. McKenzie, D. Naf, J.E. Ormsby, S. Ramachandran, D.J. Reed, D.R. Shaw, P. Szauter, L.A. Trombley
BI Session 2: Intelligent Cooperation & Information Mining in Bio-DBs, Chair: H. Jamil
An XML Repository for Molecular Sequence DataFull-text access may be available. Sign in or learn about subscription options.pp. 35
by R.K. Wong, F. Lam, S. Graham, W. Shui
BI Session 2: Intelligent Cooperation & Information Mining in Bio-DBs, Chair: H. Jamil
Clustering 3D-Structures of Small Amino Acid Chains for Detecting Dependences from Their Sequential Context in ProteinsFull-text access may be available. Sign in or learn about subscription options.pp. 43
by A. Hinneburg, D.A. Keim, W. Brandt
BI Session 2: Intelligent Cooperation & Information Mining in Bio-DBs, Chair: H. Jamil
GQL: A Reasonable Complex SQL for Genomic DatabasesFull-text access may be available. Sign in or learn about subscription options.pp. 50
by H.M. Jamil
BI Session 3: Bio-Databases, Chair: P. Sheu
The Prometheus Taxonomic DatabaseFull-text access may be available. Sign in or learn about subscription options.pp. 63
by C. Raguenaud, J. Kennedy, P.J. Barclay
BI Session 3: Bio-Databases, Chair: P. Sheu
Scientific Data Integration: Wrapping Textual Documents with a Database View Mechanism and an XML EngineFull-text access may be available. Sign in or learn about subscription options.pp. 71
by Z. Lacroix
BI Session 3: Bio-Databases, Chair: P. Sheu
Logical and Semantic Database IntegrationFull-text access may be available. Sign in or learn about subscription options.pp. 77
by J. Kohler, M. Lange, R. Hofestadt, S. Schulze-Kremer
BI Session 3: Bio-Databases, Chair: P. Sheu
A Compiler to Transfer Controlled Vocabularies and Ontologies Represented in an Object-Oriented Programming Language into Text Mark-Up LanguagesFull-text access may be available. Sign in or learn about subscription options.pp. 81
by J.R. Reich
BI Session 4: Biomedical Databases, Chair: A. Bansal
An Object Relational Approach to Biomedical DatabaseFull-text access may be available. Sign in or learn about subscription options.pp. 91
by P.C.-Y. Sheu, B. Cummings, C. Cotman, C. Chubb, L. Hu, T. Wang, J. Johnson, S. Mobley, T. Stitch, Y. Inagaki
BI Session 4: Biomedical Databases, Chair: A. Bansal
Gene Mapping by Haplotype Pattern MiningFull-text access may be available. Sign in or learn about subscription options.pp. 99
by H.T.T. Toivonen, P. Onkamo, K. Vasko, V. Ollikainen, P. Sevon, H. Mannila, J. Kere
BI Session 4: Biomedical Databases, Chair: A. Bansal
A Graph-Based Meta-Data Framework for Interoperation between Genome DatabasesFull-text access may be available. Sign in or learn about subscription options.pp. 109
by Kei-Hoi Cheung, Dong-Guk Shin
BI Session 4: Biomedical Databases, Chair: A. Bansal
Achieving Interoperability of Genome Databases through Intelligent Web MediatorsFull-text access may be available. Sign in or learn about subscription options.pp. 118
by H.M. Jamil
BI Session 5: Evolutionary Computing, Chair: B. Parvin
Phylogenetic Tree Reconstruction Using Self-Adaptive Genetic AlgorithmFull-text access may be available. Sign in or learn about subscription options.pp. 129
by A. Skourikhine
BI Session 5: Evolutionary Computing, Chair: B. Parvin
Futuristic Combinatorial Analog Computing Systems: the DNA Synchro SolutionFull-text access may be available. Sign in or learn about subscription options.pp. 135
by E. Hibbs
BI Session 5: Evolutionary Computing, Chair: B. Parvin
Mathematical Modelling in Genetic Networks: Relationships Between the Genetic Expression and Both Chromosomic Breakage and Positive CircuitsFull-text access may be available. Sign in or learn about subscription options.pp. 141
by J. Aracena, S. Ben Lamine, M.A. Mermet, O. Cohen, J. Demongeot
BI Session 5: Evolutionary Computing, Chair: B. Parvin
Amplification of Perspectives in the Use of Evolutionary ComputationFull-text access may be available. Sign in or learn about subscription options.pp. 150
by J. Falqueto, J.M. Barreto, P.S. da Silva Borges
BI Session 6: Genomics I, Chair: A. Skourikhine
Genomic Signature is Preserved in Short DNA FragmentsFull-text access may be available. Sign in or learn about subscription options.pp. 161
by P. Deschavanne, A. Giron, J. Vilain, C. Dufraigne, B. Fertil
BI Session 6: Genomics I, Chair: A. Skourikhine
Mining Residue Contacts in Proteins Using Local Structure PredictionsFull-text access may be available. Sign in or learn about subscription options.pp. 168
by M.J. Zaki, Shan Jin, C. Bystroff
BI Session 6: Genomics I, Chair: A. Skourikhine
A Heuristic Algorithm for Blocked Multiple Sequence AlignmentFull-text access may be available. Sign in or learn about subscription options.pp. 176
by Tao Jiang, Peng Zhao
BI Session 6: Genomics I, Chair: A. Skourikhine
A Framework of Automated Reconstruction of Microbial Metabolic PathwaysFull-text access may be available. Sign in or learn about subscription options.pp. 184
by A.K. Bansal
BI Session 7: Genomics II, Chairs: C. Koutsougeras and A. Frank
Linguistic Analysis of the Nucleoprotein Gene of Influenza A VirusFull-text access may be available. Sign in or learn about subscription options.pp. 193
by A.N. Skourikhine, T. Burr
BI Session 7: Genomics II, Chairs: C. Koutsougeras and A. Frank
Selecting Optimum DNA Oligos for MicroarraysFull-text access may be available. Sign in or learn about subscription options.pp. 200
by Fugen Li, G.D. Stormo
BI Session 7: Genomics II, Chairs: C. Koutsougeras and A. Frank
Making Genome Expression Data Meaningful: Prediction and Discovery of Classes of Cancer through a Connectionist Learning ApproachFull-text access may be available. Sign in or learn about subscription options.pp. 208
by F. Azuaje
BI Session 7: Genomics II, Chairs: C. Koutsougeras and A. Frank
Knowledge Discovery of Gene Functions and Metabolic PathwaysFull-text access may be available. Sign in or learn about subscription options.pp. 214
by Su-Shing Chen
BE Session 1: Biomedical Applications, Chair: L. Tsoukalas
Global Optimization Approaches to MEG Source LocalizationFull-text access may be available. Sign in or learn about subscription options.pp. 223
by Tianzi Jiang, Xiaodong Li, F. Kruggel
BE Session 1: Biomedical Applications, Chair: L. Tsoukalas
Simulation Studies on the Dynamics of Diabetes MellitusFull-text access may be available. Sign in or learn about subscription options.pp. 231
by F.C. Erzen, G. Birol, A. Cinar
BE Session 1: Biomedical Applications, Chair: L. Tsoukalas
Wearable Computer As a Multi-Parametric Monitor for Physiological SignalsFull-text access may be available. Sign in or learn about subscription options.pp. 236
by J.C.D. Conway, A.O. Fernandes, C.J.N. Coelho, Jr., L.C.G. Andrade, D.C. da Silva, Jr., H.S. Carvalho
BE Session 2: Neural and Connectionist Models, Chair: O. Bukhres
Classification and Estimation of Ultrasound Speckle Noise with Neural NetworksFull-text access may be available. Sign in or learn about subscription options.pp. 245
by M.P. Wachowiak, A.S. Elmaghraby, R. Smolikova, J.M. Zurada
BE Session 2: Neural and Connectionist Models, Chair: O. Bukhres
On Parameter Estimation for Neuron ModelsFull-text access may be available. Sign in or learn about subscription options.pp. 253
by J.L. Madden, Z.B. Miled, R.C.Y. Chin, J. Schild
BE Session 2: Neural and Connectionist Models, Chair: O. Bukhres
A Digital Retina-Like Low Level Vision ProcessorFull-text access may be available. Sign in or learn about subscription options.pp. 263
by S. Mertoguno, N. Bourbakis
BE Session 2: Neural and Connectionist Models, Chair: O. Bukhres
New Generation Intelligent Hearing ProstheticsFull-text access may be available. Sign in or learn about subscription options.pp. 270
by A. Radhakrishnan, V. Viswanathan, R. Gao, L.H. Tsoukalas, S. Bassens
BE Session 3: Bio-Imaging I, Chair: G. Bebis
A New Automatic Circular Decomposition Algorithm Applied to Blood Cells ImageFull-text access may be available. Sign in or learn about subscription options.pp. 277
by L.V. Guimaraes, A.A. Suzim, J. Maeda
BE Session 3: Bio-Imaging I, Chair: G. Bebis
BioSig: a Bioinformatic System for Studying the Mechanism of Inter-Cell SignalingFull-text access may be available. Sign in or learn about subscription options.pp. 281
by B. Parvin, G. Cong, G. Fontenay, J. Taylor, R. Henshall, M.H. Barcellos-Hoff
BE Session 3: Bio-Imaging I, Chair: G. Bebis
A Global Description of Medical Image with High PrecisionFull-text access may be available. Sign in or learn about subscription options.pp. 289
by R. Chbeir, F. Favetta
BE Session 3: Bio-Imaging I, Chair: G. Bebis
Surface Parameterization in Volumetric Images for Feature ClassificationFull-text access may be available. Sign in or learn about subscription options.pp. 297
by R.W.I. Yarger, F.K.H. Quek
BE Session 4: Bio-Imaging II, Chair: N. Bourbakis
Reconstructing Specimens Using DIC Microscope ImagesFull-text access may be available. Sign in or learn about subscription options.pp. 307
by F. Kagalwala, T. Kanade
BE Session 4: Bio-Imaging II, Chair: N. Bourbakis
General Non-Invasive Shape Reconstruction and Recognition Method Applied to 3D External Biologic MorphologiesFull-text access may be available. Sign in or learn about subscription options.pp. 316
by A.C. Aimmermann, A.A. Concalves, Jr., J.M. Barreto
BE Session 4: Bio-Imaging II, Chair: N. Bourbakis
Registration by Maximization of Mutual Information-A Cross Validation StudyFull-text access may be available. Sign in or learn about subscription options.pp. 322
by L. Freire, F. Godinho
BE Session 4: Bio-Imaging II, Chair: N. Bourbakis
FURY: Fuzzy Unification and Resolution Based on Edit DistanceFull-text access may be available. Sign in or learn about subscription options.pp. 330
by D. Gilbert, M. Schroeder
BE Session 5: Searching and Tracking, Chair: O. Kia
Automated Left Ventricle Boundary DelineationFull-text access may be available. Sign in or learn about subscription options.pp. 339
by Lei Sui, R.M. Haralick, F.H. Sheehan
BE Session 5: Searching and Tracking, Chair: O. Kia
Model Based Contour Searching MethodFull-text access may be available. Sign in or learn about subscription options.pp. 347
by Yingjie Tang, Lei He, Xun Wang, W.G. Wee
BE Session 5: Searching and Tracking, Chair: O. Kia
A Divide and Conquer Deformable Contour MethodFull-text access may be available. Sign in or learn about subscription options.pp. 355
by Xun Wang, W.G. Wee
BE Session 6: Dynamics and Control in Biomedicine, Chairs: B. Paden and R. Sepulchre
Feedback Analysis of Calcium Homeostasis and Parturient ParesisFull-text access may be available. Sign in or learn about subscription options.pp. 365
by H. El-Samad, M. Khammash
BE Session 6: Dynamics and Control in Biomedicine, Chairs: B. Paden and R. Sepulchre
Pencil Beam Scanning: a Dynamical Approach to Proton TherapyFull-text access may be available. Sign in or learn about subscription options.pp. 370
by R. Sepulchre, M. Gerard, B. Marchand, D. Prieels, B. Bauvir
BE Session 6: Dynamics and Control in Biomedicine, Chairs: B. Paden and R. Sepulchre
Hierarchical control for artificial heartsFull-text access may be available. Sign in or learn about subscription options.pp. 376
by J.R. Boston, J.F. Antaki, M.A. Simaan
BE Session 6: Dynamics and Control in Biomedicine, Chairs: B. Paden and R. Sepulchre
Author IndexFreely available from IEEE.pp. 385
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