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2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Dec. 18 2010 to Dec. 21 2010

Hong Kong China

ISBN: 978-1-4244-8306-8

Table of Contents

[Copyright notice]Freely available from IEEE.pp. 1-1
Predicting DNA-binding locations and orientation on proteins using knowledge-based learning of geometric propertiesFull-text access may be available. Sign in or learn about subscription options.pp. 3-8
by Chien-Chih Wang, Chien-Yu Chen
Classification of genome-wide copy number variations and their associated SNP and gene networks analysisFull-text access may be available. Sign in or learn about subscription options.pp. 9-12
by Yang Liu, Yiu Fai Lee, K. Ng Michael
Prediction of low coverage prone regions for Illumina sequencing projects using a support vector machineFull-text access may be available. Sign in or learn about subscription options.pp. 13-16
by Zejun Zheng, Bertil Schmidt, Guillaume Bourque
Protein-protein interaction prediction using desolvation energies and interface propertiesFull-text access may be available. Sign in or learn about subscription options.pp. 17-22
by Luis Rueda, Sridip Banerjee, Md. Mominul Aziz, Mohammad Raza
Prediction of DNA-binding protein based on alpha shape modelingFull-text access may be available. Sign in or learn about subscription options.pp. 23-28
by Weiqiang Zhou, Hong Yan
Gene cluster profile vectors: A novel method to infer functional coupling using both gene proximity and co-occurrence profilesFull-text access may be available. Sign in or learn about subscription options.pp. 29-34
by Vikas Rao Pejaver, Sun Kim
Phylogenetic reconstruction with gene rearrangements and gene lossesFull-text access may be available. Sign in or learn about subscription options.pp. 35-38
by Yiwei Zhang, Fei Hu, Jijun Tang
Detecting SNPs-disease associations using Bayesian networksFull-text access may be available. Sign in or learn about subscription options.pp. 39-42
by Bing Han, Xue-wen Chen
Accurate prediction of ATP-binding residues using sequence and sequence-derived structural descriptorsFull-text access may be available. Sign in or learn about subscription options.pp. 43-48
by Ke Chen, J. Mizianty Marcin, Lukasz Kurgan
Unsupervised integration of multiple protein disorder predictorsFull-text access may be available. Sign in or learn about subscription options.pp. 49-52
by Ping Zhang, Zoran Obradovic
Sequence and structural features of binding site residues in protein-protein complexesFull-text access may be available. Sign in or learn about subscription options.pp. 53-56
by M. Michael Gromiha, N. Saranya, S. Selvaraj, B. Jayaram, Kazuhiko Fukui
Structural parsimony: Reductions in sequence spaceFull-text access may be available. Sign in or learn about subscription options.pp. 57-61
by Roberto Blanco
Protein-protein interaction prediction via Collective Matrix FactorizationFull-text access may be available. Sign in or learn about subscription options.pp. 62-67
by Qian Xu, Evan Wei Xiang, Qiang Yang
Characterization of structural features for small regulatory RNAs in Escherichia coli genomesFull-text access may be available. Sign in or learn about subscription options.pp. 68-72
by Shu-Yun Le, A. Shapiro Bruce
Prediction of Protein-RNA interaction site using SVM-KNN algorithm with spatial informationFull-text access may be available. Sign in or learn about subscription options.pp. 73-76
by Wei Chen, Shao-Wu Zhang, Yong-Mei Cheng, Quan Pan
Enhanced reference guided assemblyFull-text access may be available. Sign in or learn about subscription options.pp. 77-80
by Federica Cattonaro, Alberto Policriti, Francesco Vezzi
A possible mutation that enables H1N1 influenza a virus to escape antibody recognitionFull-text access may be available. Sign in or learn about subscription options.pp. 81-84
by T. T. Su Chinh, D. Handoko Stephanus, Chee-Keong Kwoh, Christian Schonbach, Xiaoli Li
CEO a cloud epistasis computing model in GWASFull-text access may be available. Sign in or learn about subscription options.pp. 85-90
by Zhengkui Wang, Yue Wang, Kian-Lee Tan, Limsoon Wong, Divyakant Agrawal
A new perspective of integrative genome-wide association analysis considering trans eSNP effectFull-text access may be available. Sign in or learn about subscription options.pp. 91-94
by Junho Kim, Doheon Lee
MetaPhyler: Taxonomic profiling for metagenomic sequencesFull-text access may be available. Sign in or learn about subscription options.pp. 95-100
by Bo Liu, Theodore Gibbons, Mohammad Ghodsi, Mihai Pop
MiRNAs as promising phylogenetic markers for inferring deep metazoan phylogeny and in support of Olfactores hypothesisFull-text access may be available. Sign in or learn about subscription options.pp. 101-104
by Qingqing Cai, Xiaoyan Zhang, Zoufeng Li
alns — A searchable and filterable sequence alignment formatFull-text access may be available. Sign in or learn about subscription options.pp. 105-108
by Ross K K Leung, Stephen K W Tsui
Protein 8-class secondary structure prediction using Conditional Neural FieldsFull-text access may be available. Sign in or learn about subscription options.pp. 109-114
by Zhiyong Wang, Feng Zhao, Jian Peng, Jinbo Xu
Truncation of protein sequences for fast profile alignment with application to subcellular localizationFull-text access may be available. Sign in or learn about subscription options.pp. 115-120
by Man-Wai Mak, Wei Wang, Sun-Yuan Kung
CAMBer: An approach to support comparative analysis of multiple bacterial strainsFull-text access may be available. Sign in or learn about subscription options.pp. 121-126
by Michal Wozniak, Limsoon Wong, Jerzy Tiuryn
Template-based scoring functions for visualizing biological insights of H-2Kb-peptide-TCR complexesFull-text access may be available. Sign in or learn about subscription options.pp. 127-132
by I-Hsin Liu, Yu-Shu Lo, Jinn-Moon Yang
An algorithm for mapping short reads to a dynamically changing genomic sequenceFull-text access may be available. Sign in or learn about subscription options.pp. 133-136
by Tomas Flouri, Jan Holub, Costas Iliopoulos, Solon Pissis
A parallel multi-objective ab initio approach for protein structure predictionFull-text access may be available. Sign in or learn about subscription options.pp. 137-141
by David Becerra, Angelica Sandoval, Daniel Restrepo-Montoya, F. Nino Luis
NetLoc: Network based protein localization prediction using protein-protein interaction and co-expression networksFull-text access may be available. Sign in or learn about subscription options.pp. 142-148
by M. Mondal Ananda, Jianjun Hu
Probabilistic topic modeling for genomic data interpretationFull-text access may be available. Sign in or learn about subscription options.pp. 149-152
by Xin Chen, Xiaohua Hu, Xiajiong Shen, Gail Rosen
Identification and quantification of abundant species from pyrosequences of 16S rRNA by consensus alignmentFull-text access may be available. Sign in or learn about subscription options.pp. 153-157
by Yuzhen Ye
Predicting ligand binding residues using multi-positional correlations and kernel canonical correlation analysisFull-text access may be available. Sign in or learn about subscription options.pp. 158-163
by Alvaro J. González, Li Liao, Cathy H. Wu
Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron lengthFull-text access may be available. Sign in or learn about subscription options.pp. 164-170
by Authors Shao-Ke Lou, Jing-Woei Li, Hao Qin, Aldrin Kay-Yuen Yim, Leung-Yau Lo, Bing Ni, Kwong-Sak Leung, Stephen Kwok-Wing Tsui, Ting-Fung Chan
Evaluation of short read metagenomic assemblyFull-text access may be available. Sign in or learn about subscription options.pp. 171-178
by Anveshi Charuvaka, Huzefa Rangwala
A probabilistic framework for inferring ancestral genomic ordersFull-text access may be available. Sign in or learn about subscription options.pp. 179-184
by Jian Ma
An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approachesFull-text access may be available. Sign in or learn about subscription options.pp. 185-189
by Nan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin
Fuzzy C-means method with empirical mode decomposition for clustering microarray dataFull-text access may be available. Sign in or learn about subscription options.pp. 192-197
by Yan-Fei Wang, Zu-Guo Yu, Vo Anh
Overcoming drug resistance by co-targetingFull-text access may be available. Sign in or learn about subscription options.pp. 198-202
by Marzieh Ayati, Golnaz Taheri, Shahriar Arab, Limsoon Wong, Changiz Eslahchi
SoyMetDB: The soybean metabolome databaseFull-text access may be available. Sign in or learn about subscription options.pp. 203-208
by Trupti Joshi, Qiuming Yao, D. Franklin Levi, Laurent Brechenmacher, Babu Valliyodan, Gary Stacey, Henry Nguyen, Dong Xu
Machine learning approaches for the investigation of features beyond seed matches affecting miRNA bindingFull-text access may be available. Sign in or learn about subscription options.pp. 209-213
by Cen Gao, Jing Li
A non-parameter Ising model for network-based identification of differentially expressed genes in recurrent breast cancer patientsFull-text access may be available. Sign in or learn about subscription options.pp. 214-217
by Xumeng Li, F. Alex Feltus, Xiaoqian Sun, Zijun Wang, Feng Luo
Utilizing Cox regression model to assess the relations between predefined gene sets and the survival outcome of lung adenocarcinomaFull-text access may be available. Sign in or learn about subscription options.pp. 218-221
by Jo-Yang Lu, Y Chuang Eric, K. Hsiao Chuhsing, Mong-Hsun Tsai, Liang-Chuan Lai, Pei-Chun Chen
Iterative correction of suppressed peptide profiles from FTMS measurementsFull-text access may be available. Sign in or learn about subscription options.pp. 222-227
by Xuepo Ma, J. Hestilow Travis, Jian Cui, Jianqiu Zhang
Outcomes of gene association analysis of cancer microarray data are impacted by pre-processing algorithmsFull-text access may be available. Sign in or learn about subscription options.pp. 228-233
by N Baskaran, Chee Keong Kwoh, M. Hui Kam
Peptide charge state determination of tandem mass spectra from low-resolution collision induced dissociationFull-text access may be available. Sign in or learn about subscription options.pp. 234-239
by Jinhong Shi, Fang-Xiang Wu
Finding optimal control policy in Probabilistic Boolean Networks with hard constraints by using integer programming and dynamic programmingFull-text access may be available. Sign in or learn about subscription options.pp. 240-246
by Xi Chen, Tatsuya Akutsu, Takeyuki Tamura, Wai-Ki Ching
Semi-supervised learning protein complexes from protein interaction networksFull-text access may be available. Sign in or learn about subscription options.pp. 247-252
by Lei Shi, Aidong Zhang
Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learningFull-text access may be available. Sign in or learn about subscription options.pp. 253-258
by Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin Printe, Satoru Miyano
Prediction of human protein kinase substrate specificitiesFull-text access may be available. Sign in or learn about subscription options.pp. 259-264
by Javad Safaei, Jan Manuch, Arvind Gupta, Ladislav Stacho, Steven Pelech
Sparse nonnegative matrix factorization with the elastic netFull-text access may be available. Sign in or learn about subscription options.pp. 265-268
by Weixiang Liu, Songfeng Zheng, Sen Jia, Linlin Shen, Xianghua Fu
Unsupervised discovery of fuzzy patterns in gene expression dataFull-text access may be available. Sign in or learn about subscription options.pp. 269-273
by P. K. Wu Gene, C. C. Chan Keith, K. C. Wong Andrew, Bin Wu
A two-stage machine learning approach for pathway analysisFull-text access may be available. Sign in or learn about subscription options.pp. 274-279
by Wei Zhang, Scott Emrich, Erliang Zeng
Decomposing PPI networks for complex discoveryFull-text access may be available. Sign in or learn about subscription options.pp. 280-283
by Guimei Liu, Chern Han Yong, Limsoon Wong, Hon Nian Chua
Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinomaFull-text access may be available. Sign in or learn about subscription options.pp. 284-289
by Tzu-Pin Lu, Liang-Chuan Lai, K. Hsiao Chuhsing, Pei-Chun Chen, Mong-Hsun Tsai, Y Chuang Eric
Ontology integration to identify protein complex in protein interaction networksFull-text access may be available. Sign in or learn about subscription options.pp. 290-295
by Bo Xu, Hongfei Lin, Zhihao Yang
A procedure for identifying master regulators in conjunction with network screening and inferenceFull-text access may be available. Sign in or learn about subscription options.pp. 296-301
by Shigeru Saito, Xinrong Zhou, Taejeong Bae, Sunghoon Kim, Katsuhisa Horimoto
Stochastic gene expression modeling with hill function for switch-like gene responsesFull-text access may be available. Sign in or learn about subscription options.pp. 302-307
by Haseong Kim, Erol Gelenbe
Multi-objective evolutionary algorithms based Interpretable Fuzzy models for microarray gene expression data analysisFull-text access may be available. Sign in or learn about subscription options.pp. 308-313
by Zhenyu Wang, Vasile Palade
An ensemble method for querying gene expression compendia with experimental listsFull-text access may be available. Sign in or learn about subscription options.pp. 3141-318
by Riet De Smet, Kathleen Marchal
Correlating CpG islands, motifs, and sequence variants in human chromosome 21Full-text access may be available. Sign in or learn about subscription options.pp. 319-322
by Leah Spontaneo, Nick Cercone
A supervised learning approach to the unsupervised clustering of genesFull-text access may be available. Sign in or learn about subscription options.pp. 322-328
by Andrew Rider, Geoffrey Siwo, Scott Emrich, Michael Ferdig, Nitesh V. Chawla Habtom
Structure identification and parameter estimation of biological s-systemsFull-text access may be available. Sign in or learn about subscription options.pp. 329-334
by Li-Zhi Liu, Fang-Xiang Wu, Li-Li Han, W. J. Zhang
An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networksFull-text access may be available. Sign in or learn about subscription options.pp. 335-340
by Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang
Global analysis of miRNA target genes in colon rectal cancerFull-text access may be available. Sign in or learn about subscription options.pp. 341-345
by Meeta Pradhan, Lakenvia Ledford, Yogesh Pandit, Mathew Palakal
A new method for alignment of LC-MALDI-TOF dataFull-text access may be available. Sign in or learn about subscription options.pp. 346-351
by Zhiqun Tang, Lihua Zhang, K. Cheema Amrita, W. Ressom Habtom
Module-based biomarker discovery in breast cancerFull-text access may be available. Sign in or learn about subscription options.pp. 352-356
by Yuji Zhang, J. Xuan Jason, Robert Clarke, W. Ressom Habtom
A graph-based elastic net for variable selection and module identification for genomic data analysisFull-text access may be available. Sign in or learn about subscription options.pp. 357-362
by Zheng Xia, Xiaobo Zhou, Wei Chen, Chunqi Chang
Cis-regulatory module detection using constraint programmingFull-text access may be available. Sign in or learn about subscription options.pp. 363-368
by Tias Guns, Hong Sun, Kathleen Marchal, Siegfried Nijssen
A generalized sequence pattern matching algorithm using complementary dual-seedingFull-text access may be available. Sign in or learn about subscription options.pp. 369-372
by Bing Ni, Leung Yau Lo, Kwong Sak Leung
Integrated analysis of the various types of microarray data using linear-mixed effects modelsFull-text access may be available. Sign in or learn about subscription options.pp. 373-379
by Sung Gon Yi, Taesung Park
A dynamic qualitative probabilistic network approach for extracting gene regulatory network motifsFull-text access may be available. Sign in or learn about subscription options.pp. 380-385
by Zina M. Ibrahim, Alioune Ngom, Ahmed Y. Tawfik
A parameterless automatic spot detection method for cDNA microarray imagesFull-text access may be available. Sign in or learn about subscription options.pp. 388-392
by Iman Rezaeian, Luis Rueda
An accurate, automatic method for markerless alignment of electron tomographic imagesFull-text access may be available. Sign in or learn about subscription options.pp. 393-396
by Qi Chu, Fa Zhang, Kai Zhang, Xiaohua Wan, Mingwei Chen, Zhiyong Liu
Spatially constrained fuzzy hyper-prototype clustering with application to brain tissue segmentationFull-text access may be available. Sign in or learn about subscription options.pp. 397-400
by Jin Liu, Tuan D. Pham, Wei Wen, Perminder S. Sachdev
Exploring matrix factorization techniques for significant genes identification of microarray datasetFull-text access may be available. Sign in or learn about subscription options.pp. 401-405
by Wei Kong, Xiaoyang Mou, Xiaohua Hu
Hybrid SVM/CART classification of pathogenic species of bacterial meningitis with surface-enhanced Raman scatteringFull-text access may be available. Sign in or learn about subscription options.pp. 406-409
by Chung-Yueh Huang, Tsung-Heng Tsai, Bing-Cheng Wen, Chia-Wen Chung, Yung-Jui Li, Ya-Ching Chuang, Wen-Jie Lin, Li-Li Li, Juen-Kai Wang, Yuh-Lin Wang, Chi-Hung Lin, Da-Wei Wang
Improved mammographic mass retrieval performance using multi-view informationFull-text access may be available. Sign in or learn about subscription options.pp. 410-415
by Wei Liu, Weidong Xu, Lihua Li, Shuang Li, Huanping Zhao, Juan Zhang
A fast and noise-adaptive rough-fuzzy hybrid algorithm for medical image segmentationFull-text access may be available. Sign in or learn about subscription options.pp. 416-421
by Arpit Srivastava, Abhinav Asati, Mahua Bhattacharya
Sparse canonical correlation analysis applied to fMRI and genetic data fusionFull-text access may be available. Sign in or learn about subscription options.pp. 422-426
by David Boutte, Jingyu Liu
Solving training issues in the application of the wavelet transform to precisely analyze human body acceleration signalsFull-text access may be available. Sign in or learn about subscription options.pp. 427-432
by E. Martin
A Naïve Bayes classifier for differential diagnosis of Long QT Syndrome in childrenFull-text access may be available. Sign in or learn about subscription options.pp. 433-437
by Long Qu, Victoria L. Vetter, Geoffrey L. Bird, Haijun Qiu, Peter S. White
Non-negative matrix and tensor factorization based classification of clinical microarray gene expression dataFull-text access may be available. Sign in or learn about subscription options.pp. 438-443
by Yifeng Li, Alioune Ngom
Improving robustness of gene ranking by resampling and permutation based score correction and normalizationFull-text access may be available. Sign in or learn about subscription options.pp. 444-449
by Feng Yang, K. Z. Mao
Autoregressive modeling of DNA features for short exon recognitionFull-text access may be available. Sign in or learn about subscription options.pp. 450-455
by Nancy Y. Song, Hong Yan
Hierarchical decomposition of vessel skeletons for graph creation and feature extractionFull-text access may be available. Sign in or learn about subscription options.pp. 456-461
by Klaus Drechsler, Cristina Oyarzun Laura
Semi-supervised feature learning from clinical textFull-text access may be available. Sign in or learn about subscription options.pp. 462-466
by Zhuoran Wang, John Shawe-Taylor, Anoop Shah
Predicting human microRNA-disease associations based on support vector machineFull-text access may be available. Sign in or learn about subscription options.pp. 467-472
by Qinghua Jiang, Guohua Wang, Tianjiao Zhang, Yadong Wang
A sparse regulatory network of copy-number driven expression reveals putative breast cancer oncogenesFull-text access may be available. Sign in or learn about subscription options.pp. 473-478
by Yinyin Yuan, Christina Curtis, Carlos Caldas, Florian Markowetz
Network-based identification of smoking-associated gene signature for lung cancerFull-text access may be available. Sign in or learn about subscription options.pp. 479-484
by Ying-Wooi Wan, Changchang Xiao, Nancy Lan Guo
Detection and application of CagA sequence markers for assessing risk factor of gastric cancer caused by Helicobacter pyloriFull-text access may be available. Sign in or learn about subscription options.pp. 485-488
by Chao Zhang, Shunfu Xu, Dong Xu
Discovering negative correlated gene sets from integrative gene expression data for cancer prognosisFull-text access may be available. Sign in or learn about subscription options.pp. 489-492
by Tao Zeng, Xuan Guo, Juan Liu
A gene ranking method using text-mining for the identification of disease related genesFull-text access may be available. Sign in or learn about subscription options.pp. 493-498
by Hyungmin Lee, Miyoung Shin, Munpyo Hong
A novel reinforcement learning framework for online adaptive seizure predictionFull-text access may be available. Sign in or learn about subscription options.pp. 499-504
by Shouyi Wang, Wanpracha Art Chaovalitwongse, Stephen Wong
Metabolomic profiling for biomarker discovery in pancreatic cancerFull-text access may be available. Sign in or learn about subscription options.pp. 505-509
by Prabhjit Kaur, Kathryn Sheikh, Alexander Kirilyuk, Ksenia Kirilyuk, Habtom W. Ressom, Amrita K Cheema, Bhaskar Kallakury
Intracranial pressure level prediction in traumatic brain injury by extracting features from multiple sources and using machine learning methodsFull-text access may be available. Sign in or learn about subscription options.pp. 510-515
by Wenan Chen, Charles Cockrell, Kevin R. Ward, Kayvan Najarian
Exploitation of 3D Stereotactic Surface Projection for automated classification of Alzheimer's disease according to dementia levelsFull-text access may be available. Sign in or learn about subscription options.pp. 516-519
by Murat Seckin Ayhan, Ryan G. Benton, Vijay V. Raghavan, Suresh Choubey
Gene selection using 1-norm regularization for multi-class microarray dataFull-text access may be available. Sign in or learn about subscription options.pp. 520-524
by Xiaofei Nan, Nan Wang, Ping Gong, Chaoyang Zhang, Yixin Chen, Dawn Wilkins
Eigenspectra, a robust regression method for multiplexed Raman spectra analysisFull-text access may be available. Sign in or learn about subscription options.pp. 525-530
by Shuo Li, Jean Gao, James O Nyagilo, Digant P Dave
A new method for measuring the semantic similarity on gene ontologyFull-text access may be available. Sign in or learn about subscription options.pp. 533-538
by Ying Shen, Shaohong Zhang, Hau-San Wong
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