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2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)

Oct. 4 2012 to Oct. 7 2012

Philadelphia, PA

Table of Contents

Papers
Spatial index and visualization of protein structureFull-text access may be available. Sign in or learn about subscription options.pp. 540-543
by Hui Li, Chunmei Liu, Legand Burge, William Southerland
Papers
Predicting protein-protein interactions using full Bayesian networkFull-text access may be available. Sign in or learn about subscription options.pp. 544-550
by Hui Li, Chunmei Liu, Legand Burge, Kyung Dae Ko, William Southerland
Papers
Identification and analysis of gene clusters in biological dataFull-text access may be available. Sign in or learn about subscription options.pp. 551-557
by Liliana Marcela Olarte Mesa, Luis Fernando Nino Vasquez, Liliana Lopez-Kleine
Papers
Enriching miRNA binding site specificity with sequence profile based filtering of 3'-UTR region of mRNAFull-text access may be available. Sign in or learn about subscription options.pp. 558-563
by Jasjit K. Banwait, Hesham Ali, Dhundy K Bastola
Papers
A network and functional investigation of illicit drugs and their targetsFull-text access may be available. Sign in or learn about subscription options.pp. 564-569
by Ravi V. Atreya, Jingchun Sun, Zhongming Zhao
Papers
Constraint-driven optimization of plant defense model parametersFull-text access may be available. Sign in or learn about subscription options.pp. 570-574
by Dragana Miljkovic, Matjaz Depolli, Igor Mozetic, Nada Lavrac, Tjasa Stare, Marko Petek, Kristina Gruden
Papers
Prediction of antimicrobial activity of peptides using relational machine learningFull-text access may be available. Sign in or learn about subscription options.pp. 575-580
by Andrea Szaboova, Ondrej Kuzelka, Filip Zelezny
Papers
Identifying functional modules in tissue specific protein interaction networkFull-text access may be available. Sign in or learn about subscription options.pp. 581-586
by Gang Chen, Jianxin Wang
Papers
A hybrid approach of support vector machines with logistic regression for β-turn predictionFull-text access may be available. Sign in or learn about subscription options.pp. 587-593
by Murtada Khalafallah Elbashir, Wang Jianxin, FangXiang Wu
Papers
Combining labeled and unlabeled data for biomédical event extractionFull-text access may be available. Sign in or learn about subscription options.pp. 594-601
by Jian Wang, Qian Xu, Hongfei Lin, Zhihao Yang, Yanpeng Li
Papers
A population-based evolutionary algorithm for sampling minima in the protein energy surfaceFull-text access may be available. Sign in or learn about subscription options.pp. 64-71
by Sameh Saleh, Brian Olson, Amarda Shehu
Papers
A fuzzy cluster-based algorithm for peptide identificationFull-text access may be available. Sign in or learn about subscription options.pp. 602-609
by Xijun Liang, Zhonghang Xia, Xinnan Niu, Andrew J. Link, Liping Pang, Fangxiang Wu, Hongwei Zhang
Papers
Evaluation of normalization methods for analysis of LC-MS dataFull-text access may be available. Sign in or learn about subscription options.pp. 610-617
by Mohammad R. Nezami Ranjbar, Yi Zhao, Mahlet G. Tadesse, Yue Wang, Habtom W. Ressom
Papers
An efficient dynamic programming algorithm for phosphorylation site assignment of large-scale mass spectrometry dataFull-text access may be available. Sign in or learn about subscription options.pp. 618-625
Papers
A syntactic rule-based method for automatic pathway information extraction from biomédical literatureFull-text access may be available. Sign in or learn about subscription options.pp. 626-633
by Yanhua Wang, Zhihao Yang, Hongfei Lin, Yanpeng Li
Papers
Effectively predicting protein functions by collective classification — An extended abstractFull-text access may be available. Sign in or learn about subscription options.pp. 634-639
by Wei Xiong, Hui Liu, Jihong Guan, Shuigeng Zhou
Papers
Classifying protein complexes from candidate subgraphs using fuzzy machine learning modelFull-text access may be available. Sign in or learn about subscription options.pp. 640-647
by Bo Xu, Hongfei Lin, Zhihao Yang, Kavishwar B. Wagholikar, Hongfang Liu
Papers
A statistical approach to peptide identification from clustered tandem mass spectrometry dataFull-text access may be available. Sign in or learn about subscription options.pp. 648-653
by Soyoung Ryu, David R. Goodlett, William S. Noble, Vladimir N. Minin
Papers
Managing data provenance in genome project workflowsFull-text access may be available. Sign in or learn about subscription options.pp. 654-661
by Renato de Paula, Maristela T. Holanda, Maria Emilia M. T. Walter, Sergio Lifschitz
Papers
A novel quasi-alignment-based method for discovering conserved regions in genetic sequencesFreely available from IEEE.pp. 662-669
by Anurag Nagar, Michael Hahsler
Papers
Bamchop: A bioinformatics utility to summarize and visualize exome and other types of targeted resequencing dataFull-text access may be available. Sign in or learn about subscription options.pp. 670-673
by Zhe Zhang, Jeremy Leipzig, Ariella Sasson, Juan Carlos Perin, Michael Xie, Mahdi Sarmady, Patrick Warren, Peter White
Papers
Meta-analysis of protein structural alignmentFull-text access may be available. Sign in or learn about subscription options.pp. 72-76
by Jim Havrilla, Ahmet Sacan
Papers
Identification of transposable elements of the giant panda (Ailuropoda melanoleuca) genomeFull-text access may be available. Sign in or learn about subscription options.pp. 674-681
by Avindra Fernando, Jun Huan, Justin P. Blumenstiel, Jin Lin, Xue-wen Chen, Bo Luo
Papers
On the repetitive collection indexing problemFull-text access may be available. Sign in or learn about subscription options.pp. 682-687
by Ali Alatabbi, Carl Barton, Costas S. Iliopoulos
Papers
Libgapmis: An ultrafast library for short-read single-gap alignmentFull-text access may be available. Sign in or learn about subscription options.pp. 688-695
by Nikolaos Alachiotis, Simon Berger, Tomas Flouri, Solon P. Pissis, Alexandras Stamatakis
Papers
A meta-genome sequencing and assembly preprocessing algorithm inspired by restriction site base compositionFull-text access may be available. Sign in or learn about subscription options.pp. 696-703
Papers
An efficient overlap graph coarsening approach for modeling short readsFull-text access may be available. Sign in or learn about subscription options.pp. 704-711
by Julia Warnke, Hesham H. Ali
Papers
The effect of human genome annotation complexity on RNA-Seq gene expression quantificationFull-text access may be available. Sign in or learn about subscription options.pp. 712-717
by Po-Yen Wu, John H. Phan, May D. Wang
Papers
Read-mapping using personalized diploid reference genome for RNA sequencing data reduced bias for detecting allele-specific expressionFull-text access may be available. Sign in or learn about subscription options.pp. 718-724
by Shuai Yuan, Zhaohui Qin
Papers
Extracting volumetric information from standard two-dimensional radiological annotations within the clinical workflowFull-text access may be available. Sign in or learn about subscription options.pp. 725-731
by Sharmili Roy, Michael S. Brown, George L. Shih
Papers
Detecting stairs and pedestrian crosswalks for the blind by RGBD cameraFull-text access may be available. Sign in or learn about subscription options.pp. 732-739
by Shuihua Wang, Yingli Tian
Papers
An ontology-based MicroRNA knowledge sharing and acquisition frameworkFull-text access may be available. Sign in or learn about subscription options.pp. 740-747
by Jingshan Huang, Xingyu Lu, Dejing Dou, William T. Gerthoffer, Jiangbo Dang, Judith A. Blake, Ming Tan
Papers
A new greedy heuristic for 3DHP protein struture prediction with side chainFull-text access may be available. Sign in or learn about subscription options.pp. 77-81
by Lauro Cesar Galvao, Luiz Fernando Nunes, Heitor Silverio Lopes
Papers
Model-based design of a wireless telemetry system and QoS assessment using AADLFull-text access may be available. Sign in or learn about subscription options.pp. 748-749
by Kyungtae Kang, Min-Young Nam, Jaemyoun Lee, Juyoung Park, Homin Yoo, Lui Sha
Papers
Graph based unsupervised feature selection for microarray dataFull-text access may be available. Sign in or learn about subscription options.pp. 750-751
by Tripti Swarnkar, Pabitra Mitra
Papers
Dimensionality reduction to improve content-based image retrieval: A clustering approachFull-text access may be available. Sign in or learn about subscription options.pp. 752-753
by Francisco R. Pirolla, Marilde T. P. Santos, Joaquim C. Felipe, Marcela X. Ribeiro
Papers
Analysis of an ensemble algorithm for clustering cancer dataFull-text access may be available. Sign in or learn about subscription options.pp. 754-755
by Dengyuan Wu, Li Sheng, Eric Xu, Kai Xing, Dechang Chen
Papers
A comparison between hierarchical clustering and community detection method in the collection of gene targets for molecular identification of pathogenic fungiFull-text access may be available. Sign in or learn about subscription options.pp. 756-761
by Ishwor Thapa, Sanjukta Bhowmick, Dhundy R Bastola
Papers
Analysis of questionnaire for traditional medical and develop decision support systemFull-text access may be available. Sign in or learn about subscription options.pp. 762-763
by Kotoe Katayama, Seiya Imoto, Kenji Watanabe, Rui Ymaguchi, Keiko Matsuura, Satoru Miyano
Papers
Computer vision-based mathematics learning enhancement for children with visual impairmentsFull-text access may be available. Sign in or learn about subscription options.pp. 764-770
by Chenyang Zhang, Mohsin Shabbir, Despina Stylianou, Yingli Tian
Papers
Mapping the field of Bioinformatics with a content and co-authorship analysisFull-text access may be available. Sign in or learn about subscription options.pp. 774-781
by Min Song, Christopher C. Yang, Xuning Tang, Wook-Shin Han
Papers
A security framework for XML schemas and documents for healthcareFull-text access may be available. Sign in or learn about subscription options.pp. 782-789
by Alberto De la Rosa Algarin, Steven A. Demurjian, Solomon Berhe, Jaime A. Pavlich-Mariscal
Frequency tracking of resonant-like sounds from audio recordings of arterio-venous fistula stenosisFull-text access may be available. Sign in or learn about subscription options.pp. 771-773
by Pablo Vásquez Obando, Bengt Mandersson
Papers
Towards a hybrid method for detecting critical protein residuesFull-text access may be available. Sign in or learn about subscription options.pp. 82-85
by Bahar Akbal-Delibas, Filip Jagodzinski, Nurit Haspel
Papers
Clinical coding support based on structured data stored in electronic health recordsFull-text access may be available. Sign in or learn about subscription options.pp. 790-797
by Jose C. Ferrao, Monica D. Oliveira, Filipe Janela, Henrique M. G. Martins
Papers
A proposed star schema and extraction process to enhance the collection of contextual & semantic information for clinical research data warehousesFull-text access may be available. Sign in or learn about subscription options.pp. 798-805
by Michael Blechner, Rishi Kanth Saripalle, Steven A Demurjian
Papers
SMARTSync: Towards patient-driven medication reconciliationFull-text access may be available. Sign in or learn about subscription options.pp. 806-813
by T. B. Ziminski, A. De la Rosa Algarin, R. Saripalle, S. Demurjian, E. Jackson
Papers
Intracavitary signal analysis for atrial fibrillation predictionFull-text access may be available. Sign in or learn about subscription options.pp. 814-815
by P. Vizza, G. Tradigo, A. Curcio, C. Indolu, P. Veltri
Papers
A context and knowledge based health event storage for efficient clinical information retrievalFull-text access may be available. Sign in or learn about subscription options.pp. 822-823
by Soubhik Paul, Sandip Bhaumik
Papers
Integrated analysis of hela cell microRNAs' microarray data and anti-cancer pathway prediction of beta-sitosterolFull-text access may be available. Sign in or learn about subscription options.pp. 824-830
by Xijia Fei, Dachuang Liu, Cuihong Dai, Aiju Hou, Jianzhong Li, Dechang Xu
Capturing disease-symptom relations using higher-order co-occurrence algorithmsFull-text access may be available. Sign in or learn about subscription options.pp. 816-821
by V. Datla, King-Ip Lin, M. Louwerse
Papers
Feature selections using AdaBoost: Application in gene-gene interaction detectionFull-text access may be available. Sign in or learn about subscription options.pp. 831-837
by Amin Assareh, L. Gwenn Volkert, Jing Li
Papers
GxG-Viztool: A program for visualizing gene-gene interactions in genetic association analysisFull-text access may be available. Sign in or learn about subscription options.pp. 838-843
by Kyunga Kim, Min-Seok Kwon, Sung Young Lee, Junghyun Namkung, Ming D. Li, Taesung Park
Papers
A data aggregation framework for cancer subtype discoveryFull-text access may be available. Sign in or learn about subscription options.pp. 844-846
by S. N. Nagabhushan, TaeJin Ahn, M. R. Srikanth, Taesung Park, Ajit S. Bopardikar, Rangavittal Narayanan
Papers
A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflowsFull-text access may be available. Sign in or learn about subscription options.pp. 86-93
by Boyu Zhang, Daniel T. Yehdego, Kyle L. Johnson, Ming-Ying Leung, Michela Taufer
Papers
Identifying differential expression for RNA-seq data with no replicationFull-text access may be available. Sign in or learn about subscription options.pp. 847-851
by Jungsoo Gim, Taesung Park
Papers
Joint selection of SNPs for improving prediction in genome-wide association studiesFull-text access may be available. Sign in or learn about subscription options.pp. 852-858
by Seo-Jin Bang, Yong-Gang Kim, Taesung Park
Papers
Predictive modeling of nanomaterial biological effectsFull-text access may be available. Sign in or learn about subscription options.pp. 859-863
by Xiong Liu, Kaizhi Tang, Stacey Harper, Bryan Harper, Jeffery A. Steevens, Roger Xu
Papers
Rough sets and support vector machine for selecting differentially expressed miRNAsFull-text access may be available. Sign in or learn about subscription options.pp. 864-871
by Sushmita Paul, Pradipta Maji
Papers
Predicting survial by cancer pathway gene expression profiles in the TCGAFull-text access may be available. Sign in or learn about subscription options.pp. 872-875
by Hyunsoo Kim, Markus Bredel
Papers
Grouping of colloidal metal nanoparticles based on their measurable characteristics: A proposed frameworkFull-text access may be available. Sign in or learn about subscription options.pp. 876-883
by Christie M. Sayes, Ivan V. Ivanov
Papers
The Nanomaterial Registry: Opportunities and challenges in informaticsFull-text access may be available. Sign in or learn about subscription options.pp. 884-888
by Michele L. Ostraat, Karmann C. Mills, Kimberly A. Guzan
Papers
Annotating the structure and components of a nanoparticle formulation using computable string expressionsFull-text access may be available. Sign in or learn about subscription options.pp. 889-894
by Dennis G. Thomas, Satish Chikkagoudar, Alan R. Chappell, Nathan A. Baker
Papers
NEIMiner: A model driven data mining system for studying environmental impact of nanomaterialsFull-text access may be available. Sign in or learn about subscription options.pp. 895-902
by Kaizhi Tang, Xiong Liu, Stacey Harper, Jeffery A. Steevens, Roger Xu
Papers
Combined formulation of Doxorubicin-Arg-Gly-Asp (RGD) and modified PEGylated PLGA-encapsulated nanocarrier improves anti-tumor activityFull-text access may be available. Sign in or learn about subscription options.pp. 903-909
by Stanley Moffatt, Richard Cristiano, Rose Boyle
Papers
Nanomaterial Registry: A resource for biological and environmental interactions of nanomaterialsFull-text access may be available. Sign in or learn about subscription options.pp. 910-913
by Xiao-zhong James Luo
Papers
Monotonicity functional for a transient mathematical model of oxygen depletion during Photodynamic therapyFull-text access may be available. Sign in or learn about subscription options.pp. 914-916
by Ioannis Gkigkitzis
Papers
Phylogenetic analysis of some leguminous trees using CLUSTALW2 bioinformatics toolFull-text access may be available. Sign in or learn about subscription options.pp. 917-921
by Kalpesh Anjaria
Papers
DNA sequence analysis by ORF FINDER & GENOMATIX tool: Bioinformatics analysis of some tree species of Leguminosae familyFull-text access may be available. Sign in or learn about subscription options.pp. 922-926
by Kalpesh Anjaria
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The e!DAL JAVA-API: Store, share and cite primary data in life sciencesFull-text access may be available. Sign in or learn about subscription options.pp. 927-929
Papers
PACSY database, a relational database management system for Protein structure and nuclear Magnetic Resonance chemical shift analysisFull-text access may be available. Sign in or learn about subscription options.pp. 930-932
Papers
An evolutionary framework to sample near-native protein conformationsFull-text access may be available. Sign in or learn about subscription options.pp. 933
by Sameh Saleh, Brian Olson, Amarda Shehu
Papers
Joint clustering and alignment for nucleosome occupancy analysisFull-text access may be available. Sign in or learn about subscription options.pp. 934-936
by Teng L. Liu, Yu Zhang, Jonathan H. Dennis
Papers
Quantitative models for statistical nucleosome occupancy predictionFull-text access may be available. Sign in or learn about subscription options.pp. 937-939
by Yu Zhang, Xiuwen Liu, Jonathan H. Dennis
Papers
Combining conservation and rigidity methods to detect critical residues in proteinsFull-text access may be available. Sign in or learn about subscription options.pp. 940
by Bahar Akbal-Delibas, Filip Jagodzinski, Nurit Haspel
Papers
Refining multimeric protein complexes using conservation, electrostatics and probabilistic selectionFull-text access may be available. Sign in or learn about subscription options.pp. 648-653
by Bahar Akbal-Delibas, Nurit Haspel
Papers
An evolutionary-guided iterative refinement approach for protein multimersFull-text access may be available. Sign in or learn about subscription options.pp. 941
by Bahar Akbal-Delibas, Nurit Haspel
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Physico-chemical features for recognition of antimicrobial peptidesFull-text access may be available. Sign in or learn about subscription options.pp. 942
by Daniel Veltri, Amarda Shehu
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One-base-pair localization of nucleosomesFull-text access may be available. Sign in or learn about subscription options.pp. 943-945
by Xiuwen Liu, Yu Zhang, Teng L. Liu, Jonathan H. Dennis
Papers
Jumping low, jumping high: Controlling hopping in the protein energy surfaceFull-text access may be available. Sign in or learn about subscription options.pp. 946
by Brian Olson, Amarda Shehu
Papers
Sampling low-energy protein-protein configurations with basin hoppingFull-text access may be available. Sign in or learn about subscription options.pp. 947
by Irina Hashmi, Amarda Shehu
Papers
Predicting health patterns using sensor sequence similarity and NLPFull-text access may be available. Sign in or learn about subscription options.pp. 948-950
by Zahra Hajihashemi, Mihail Popescu
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Pyroprinting sensitivity analysis on the GPUFull-text access may be available. Sign in or learn about subscription options.pp. 951-953
by Douglas Brandt, Aldrin Montana, Bob Somers, Michael Black, Anya Goodman, Chris Kitts
Papers
Assemblable project formulation for drug target discoveryFull-text access may be available. Sign in or learn about subscription options.pp. 954-955
by Byung-Cheol Kim, Sunghoon Kim
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In silico analyses of 24 human imprinted genes associated to diabesin triad (diabetes, obesity and inflammation): In search for a potential diabesin risk haplotypeFull-text access may be available. Sign in or learn about subscription options.pp. 956-958
Papers
EpSMART: Epileptic seizure monitoring with alerts in real time: A tablet-based Android application for a real-time multi-modal seizure detection systemFull-text access may be available. Sign in or learn about subscription options.pp. 959-961
by Sai R. Gouravajhala, David Wang, Lunal Khuon, Forrest S. Bao
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CryoEM skeleton length estimation using a decimated curveFull-text access may be available. Sign in or learn about subscription options.pp. 109-113
by Andrew McKnight, Kamal Al Nasr, Dong Si, Andrey Chernikov, Nikos Chrisochoides, Jing He
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Microarray therapeutic index: A novel method to combine molecular and clinical data from cancer patientsFull-text access may be available. Sign in or learn about subscription options.pp. 962-964
by Sungchul Ji, Larry Cheng, Weronika Szafran, Richard Carmona
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Classification and clustering in metagenomics with unified data management and computational frameworkFull-text access may be available. Sign in or learn about subscription options.pp. 965-967
by Zeehasham Rasheed, Huzefa Rangwala, Patrick Gillevet
Papers
Identifying protein binding functionality of protein family sequences by aligned pattern clustersFull-text access may be available. Sign in or learn about subscription options.pp. 968-970
by En-Shiun Annie Lee, Andrew K. C. Wong
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Mapping conformational pathways between known functional protein statesFull-text access may be available. Sign in or learn about subscription options.pp. 971
by Kevin Molloy, Amarda Shehu
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A usability study of the Komen Virtual Tissue BankFull-text access may be available. Sign in or learn about subscription options.pp. 972-974
by Eric Juhn, John A. Springer
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Mutation analysis of disease causing proteinsFull-text access may be available. Sign in or learn about subscription options.pp. 975-977
by Ananda Mohan Mondai, Jianjun Hu
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A tree-based search to bias sampling of protein decoy conformationsFull-text access may be available. Sign in or learn about subscription options.pp. 978
by Kevin Molloy, Amarda Shehu
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Improving accuracy in binding site comparison with homology modelingFull-text access may be available. Sign in or learn about subscription options.pp. 662-669
by Brian G. Godshall, Brian Y. Chen
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A Drug Administration Decision Support SystemFull-text access may be available. Sign in or learn about subscription options.pp. 122-129
by Wenqi You, Alena Simalatsar, Nicolas Widmer, Giovanni De Micheli
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A graph model and grammar for multi-scale modelling using XLFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Yongzhi Ong, Winfried Kurth
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Dynamical modeling of chronic myeloid leukemia progression and the development of mutationsFull-text access may be available. Sign in or learn about subscription options.pp. 130-135
by Ben-gong Zhang, Gouhei Tanaka, Luonan Chen, Kazuyuki Aihara
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Chemogenomic approach to comprehensive predictions of ligand-target interactions: A comparative studyFull-text access may be available. Sign in or learn about subscription options.pp. 136-142
by J. B. Brown, Satoshi Niijima, Akira Shiraishi, Masahiko Nakatsui, Yasushi Okuno
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A biclustering approach to analyze drug effects on extracellular matrix remodeling post-myocardial infarctionFull-text access may be available. Sign in or learn about subscription options.pp. 143-150
by Omid Ghasemi, Nguyen Nguyen, Trevi A Ramirez, Jianhua Zhang, Merry L Lindsey, Yu-Fang Jin
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