1. Home
  2. Proceedings
  3. CSB
  4. CSB 2002
Default Cover Image

Proceedings of IEEE Computer Society Bioinformatics Conference

Aug. 16 2002 to Aug. 16 2002

Stanford, CA, USA

Table of Contents

Proceedings IEEE Computer Society Bioinformatics ConferenceFreely available from IEEE.
Introduction
PrefaceFreely available from IEEE.pp. ix
Introduction
Organizing CommitteeFreely available from IEEE.pp. x
Introduction
Program CommitteeFreely available from IEEE.pp. xi
Introduction
RefereesFreely available from IEEE.pp. xii
Introduction
Keynote SpeakersFreely available from IEEE.pp. xiii
Invited Talk Abstracts
Suffix Trees (and Relatives) Come of Age in BioinformaticsFull-text access may be available. Sign in or learn about subscription options.pp. 3
by Dan Gusfield
Invited Talk Abstracts
Genome Annotation and Protein StructureFull-text access may be available. Sign in or learn about subscription options.pp. 4
by Steven E. Brenner
Invited Talk Abstracts
Decoding Noncoding Regulatory DNAs in Metazoan GenomesFull-text access may be available. Sign in or learn about subscription options.pp. 5
by Michele Markstein, Angela Stathopoulos, Vicky Markstein, Peter Markstein, Naoe Harafuji, Dave Keys, Byung-in Lee, Paul Richardson, Dan Rokshar, Mike Levine
Phylogenetics
Φ-LOG: A Domain Specific Language for Solving Phylogenetic Inference ProblemsFull-text access may be available. Sign in or learn about subscription options.pp. 9
by E. Pontelli, D. Ranjan, B. Milligan, G. Gupta
Phylogenetics
AxML: A Fast Program for Sequential and Parallel Phylogenetic Tree Calculations Based on the Maximum Likelihood MethodFull-text access may be available. Sign in or learn about subscription options.pp. 21
by Alexandros P. Stamatakis, Thomas Ludwig, Harald Meier, Marty J. Wolf
Motif Finding
Visualization of K -Tuple Distribution in Procaryote Complete Genomes and Their Randomized CounterpartsFull-text access may be available. Sign in or learn about subscription options.pp. 31
by Huimin Xie, Bailin Hao
Motif Finding
Fast and Sensitive Algorithm for Aligning ESTs to Human GenomeFull-text access may be available. Sign in or learn about subscription options.pp. 43
by Jun Ogasawara, Shinichi Morishita
Motif Finding
Rapid Large-Scale Oligonucleotide Selection for MicroarraysFull-text access may be available. Sign in or learn about subscription options.pp. 54
by Sven Rahmann
Motif Finding
Parallel Monte Carlo Methods for Physical Mapping of ChromosonesFull-text access may be available. Sign in or learn about subscription options.pp. 64
by Suchendra M. Bhandarkar, Jonathan Arnold
Genotype-Phenotype
PheGe, the Platform for Exploring Genotype-Phenotype Relations on Cellular and Organism LevelFull-text access may be available. Sign in or learn about subscription options.pp. 79
by Klaus Seidl
Genotype-Phenotype
Automated Identification of Single Nucleotide Polymorphisms from Sequencing DataFull-text access may be available. Sign in or learn about subscription options.pp. 87
by Masazumi Takahashi, Fumihiko Matsuda, Nino Margetic, Mark Lathrop
Database Mining
A Multi-Level Text Mining Method to Extract Biological RelationshipsFull-text access may be available. Sign in or learn about subscription options.pp. 97
by Mathew Palakal, Matthew Stephens, Snehasis Mukhopadhyay, Rajeev Raje, Simon Rhodes
Database Mining
A Literature Based Method for Identifying Gene-Disease ConnectionsFull-text access may be available. Sign in or learn about subscription options.pp. 109
by Lada A. Adamic, Dennis Wilkinson, Bernardo A. Huberman, Eytan Adar
Database Mining
Protein-Based Analysis of Alternative Splicing in the Human GenomeFull-text access may be available. Sign in or learn about subscription options.pp. 118
by Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose
Comparative Genomics
Constrained Multiple Sequence Alignment Tool Development and Its Application to RNase Family AlignmentFull-text access may be available. Sign in or learn about subscription options.pp. 127
by Chuan Yi Tang, Chin Lung Lu, Margaret Dah-Tsyr Chang, Yin-Te Tsai, Yuh-Ju Sun, Kun-Mao Chao, Jia-Ming Chang, Yu-Han Chiou, Chia-Mao Wu, Hao-Teng Chang, Wei-I Chou
Comparative Genomics
Fast and Sensitive Alignment of Large Genomic SequencesFull-text access may be available. Sign in or learn about subscription options.pp. 138
by Michael Brudnd, Burkhard Morgenstern
Biological Networks
Design of Genetic Switches with Only Positive Feedback LoopsFull-text access may be available. Sign in or learn about subscription options.pp. 151
by Tetsuya Kobayashi, Luonan Chen, Kazuyuki Aihara
Proteomics
An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR PeaksFull-text access may be available. Sign in or learn about subscription options.pp. 165
by Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu
Proteomics
Towards Automatic Clustering of Protein SequencesFull-text access may be available. Sign in or learn about subscription options.pp. 175
by Jiong Yang, Wei Wang
Proteomics
A Bi-Recursive Neural Network Architecture for the Prediction of Protein Coarse Contact MapsFull-text access may be available. Sign in or learn about subscription options.pp. 187
by Alessandro Vullo, Paolo Frasconi
Proteomics
Prediction of Protein Function Using Protein-Protein Interaction DataFull-text access may be available. Sign in or learn about subscription options.pp. 197
by Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun
Proteomics
Accelerating Approximate Subsequence Search on Large Protein Sequence DatabasesFull-text access may be available. Sign in or learn about subscription options.pp. 207
by Jiong Yang, Wei Wang, Yi Xia, Philip S. Yu
Gene Expression
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic NetworkFull-text access may be available. Sign in or learn about subscription options.pp. 219
by Seiya Imoto, Kim Sunyong, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Gene Expression
High Similarity Sequence Comparison in Clustering Large Sequence DatabasesFull-text access may be available. Sign in or learn about subscription options.pp. 228
by Lorie Dudoignon, Eric Glemet, Hendrik Cornelis Heus, Mathieu Raffinot
Gene Expression
A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression PatternsFull-text access may be available. Sign in or learn about subscription options.pp. 237
by Christopher James Langmead, C. Robertson McClung, Bruce Randall Donald
Gene Expression
Simultaneous Classification and Feature Clustering Using Discriminant Vector Quantization with Applications to Microarray Data AnalysisFull-text access may be available. Sign in or learn about subscription options.pp. 246
by Jia Li, Hongyuan Zha
Gene Expression
An Index Structure for Pattern Similarity Searching in DNA Microarray DataFull-text access may be available. Sign in or learn about subscription options.pp. 256
by Haixun Wang, Chang-Shing Perng, Wei Fan, Philip S. Yu
Gene Expression
A New Clustering Method for Microarray Data AnalysisFull-text access may be available. Sign in or learn about subscription options.pp. 268
by Louxin Zhang, Song Zhu
Gene Expression
An Adaptive Meta-Clustering Approach: Combining the Information from Different Clustering ResultsFull-text access may be available. Sign in or learn about subscription options.pp. 276
by Yujing Zeng, Jianshan Tang, Javier Garcia-Frias, Guang R. Gao
Computer Science and Biology
Parallelizing a DNA Simulation Code for the Cray MTA-2Full-text access may be available. Sign in or learn about subscription options.pp. 291
by Shahid H. Bokhari, Matthew A. Glaser, Harry F. Jordan, Yves Lansac, Jon R. Sauer, Bart Van Zeghbroeck
Computer Science and Biology
DNA Sequence Compression Using the Burrows-Wheeler TransformFull-text access may be available. Sign in or learn about subscription options.pp. 303
by Don Adjeroh, Yong Zhang, Amar Mukherjee, Matt Powell, Tim Bell
Computer Science and Biology
A Security System for Personal Genome Information at DNA LevelFull-text access may be available. Sign in or learn about subscription options.pp. 314
by Yumi Kawazoe, Toshikazu Shiba, Masahito Yamamoto, Azuma Ohuchi
Computer Science and Biology
Visualization Techniques for Genomic DataFull-text access may be available. Sign in or learn about subscription options.pp. 321
by Ann E. Loraine, Gregg A. Helt
Poster Abstracts
An Application of a Pathway Alignment Method to Comparative Analysis between Genome and PathwaysFull-text access may be available. Sign in or learn about subscription options.pp. 329
by Shoko Miyake, Yukako Tohsato, Hideo Matsuda
Poster Abstracts
A Bayesian Modeling Framework for Genetic RegulationFull-text access may be available. Sign in or learn about subscription options.pp. 330
by Rishi Khan, Yujing Zeng, Javier Garcia-Frias, Guang Gao
Poster Abstracts
Complexity and Application of Pedigree Analysis Programme GTreeFull-text access may be available. Sign in or learn about subscription options.pp. 333
by Daisuke Ogino, Shiro Mori, Masato Nose, Hideki Sawada
Poster Abstracts
Designing Oscillators in Synthetic Gene Networks Based on Multi-Scale DynamicsFull-text access may be available. Sign in or learn about subscription options.pp. 336
by Luonan Chen, Tetsuya Kobayashi, Kazuyuki Aihara
Poster Abstracts
Distributions of Free Energy, Melting Temperature, and Hybridization Propensity for Genomic DNA OligomersFull-text access may be available. Sign in or learn about subscription options.pp. 337
by Ryan T. Koehler, Nicolas Peyret
Poster Abstracts
Electronic Polymerase Chain Reaction (EPCR) Search AlgorithmFull-text access may be available. Sign in or learn about subscription options.pp. 338
by Conrad Shyu, James A. Foster, Larry J. Forney
Poster Abstracts
GeneCards™ 2002: An Evolving Human Gene CompendiumFull-text access may be available. Sign in or learn about subscription options.pp. 339
by Marilyn Safran, Irina Solomon, Orit Shmueli, Michal Lapidot, Shai Shen-Orr, Avital Adato, Uri Ben-Dor, Nir Esterman, Naomi Rosen, Inga Peter, Tsviya Olender, Vered Chalifa-Caspi, Doron Lancet
Poster Abstracts
HIV Protease Structural DatabaseFull-text access may be available. Sign in or learn about subscription options.pp. 340
by V. Ravichandran, Jiri Vondrasek, Gary Gilliland, T. N. Bhat, Alexander Wlodawer
Poster Abstracts
MiCA: Web-Based Computational Tools for the Analysis of Microbial Community Structure and Compisition Based on T-RFLP of 16S rRNA GenesFull-text access may be available. Sign in or learn about subscription options.pp. 341
by C. Shyu, J. A. Foster, K. X. Liao, S. J. Bent, K. Sale, L. J. Forney, T. Soule
Poster Abstracts
P-quasi Complete Linkage Analysis for Gene-Expression DataFull-text access may be available. Sign in or learn about subscription options.pp. 342
by Shigeto Seno, Reiji Teramoto, Hideo Matsuda
Poster Abstracts
A Reference Database for Medicago Truncatula Genes, Protiens, and MetabolitesFull-text access may be available. Sign in or learn about subscription options.pp. 343
by Dianjing Guo, Xingjing Li, Aejaaz Kamal, Olga Brazhnik, Pedro Mendes
Poster Abstracts
Selective Tree Growing: A Deterministic Constant-Space Linear-Time Algorithm for Pattern Discovery and for Computing Multiple Sequence AlignmentFull-text access may be available. Sign in or learn about subscription options.pp. 344
by Mashilamani Sambasivam
Poster Abstracts
Wavelet Profiles: Their Application in Oryza sativa DNA Sequence AnalysisFull-text access may be available. Sign in or learn about subscription options.pp. 345
by Nobuyuki Kawagashira, Yasuhiro Ohtomo, Kazuo Murakami, Kenichi Matsubara, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Shoshi Kikuchi
Author Index
Author IndexFreely available from IEEE.pp. 347
Showing 53 out of 53