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2012 IEEE 8th International Conference on E-Science (e-Science)

Oct. 8 2012 to Oct. 12 2012

Chicago, IL

Table of Contents

Author indexFreely available from IEEE.pp. 1-25
Table of contentsFreely available from IEEE.pp. 1-7
CommitteesFreely available from IEEE.pp. 1-6
Welcome to eScience 2012 and ChicagoFreely available from IEEE.pp. 1-2
Data-intensive analysis of HIV mutationsFull-text access may be available. Sign in or learn about subscription options.pp. 1-7
by Mina Cintho, Roberto Marcondes Cesar, João Eduardo Ferreira
RightField: Semantic enrichment of Systems Biology data using spreadsheetsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Katherine Wolstencroft, Stuart Owen, Carole Goble, Quyen Nguyen, Olga Krebs, Wolfgang Müller
Virtual Simulation Objects concept as a framework for system-level simulationFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Sergey V. Kovalchuk, Pavel A. Smirnov, Sergey S. Kosukhin, Alexander V. Boukhanovsky
A simulator for social exchanges and collaborations — Architecture and case studyFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Christian Haas, Simon Caton, Daniel Trumpp, Christof Weinhardt
Towards next generations of software for distributed infrastructures: The European Middleware InitiativeFull-text access may be available. Sign in or learn about subscription options.pp. 1-10
by Cristina Aiftimiei, Alberto Aimar, Andrea Ceccanti, Marco Cecchi, Alberto Di Meglio, Florida Estrella, Patrick Fuhrmam, Emidio Giorgio, Balázs Kónya, Laurence Field, Jon Kerr Nilsen, Morris Riedel, John White
Prediction of protein solubility in E. coliFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Taghrid Samak, Dan Gunter, Zhong Wang
Quality of data driven simulation workflowsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Michael Reiter, Uwe Breitenbücher, Oliver Kopp, Dimka Karastoyanova
Mining hidden mixture context with ADIOS-P to improve predictive pre-fetcher accuracyFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Jong Youl Choi, Hasan Abbasi, David Pugmire, Norbert Podhorszki, Scott Klasky, Cristian Capdevila, Manish Parashar, Matthew Wolf, Judy Qiu, Geoffrey Fox
Scientific workflow rewriting while preserving provenanceFull-text access may be available. Sign in or learn about subscription options.pp. 1-9
by Sarah Cohen-Boulakia, Christine Froidevaux, Jiuqiang Chen
Calibration of watershed models using cloud computingFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Marty Humphrey, Norm Beekwilder, Jonathan L. Goodall, Mehmet B. Ercan
Statistical analysis and visualization services for Spatially Integrated Social Science datasetsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Irfan Azeezullah, Friska Pambudi, Tung-Kai Shyy, Imran Azeezullah, Nigel Ward, Jane Hunter, Robert J. Stimson
CINET: A cyberinfrastructure for network scienceFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Sherif Elmeligy Abdelhamid, Richard Alo, S. M. Arifuzzaman, Pete Beckman, Md Hasanuzzaman Bhuiyan, Keith Bisset, Edward A. Fox, Geoffrey C. Fox, Kevin Hall, S. M. Shamimul Hasan, Anurodh Joshi, Maleq Khan, Chris J. Kuhlman, Spencer Lee, Jonathan P. Leidig, Hemanth Makkapati, Madhav V. Marathe, Henning S. Mortveit, Judy Qiu, S. S. Ravi, Zalia Shams, Ongard Sirisaengtaksin, Rajesh Subbiah, Samarth Swarup, Nick Trebon, Anil Vullikanti, Zhao Zhao
P∗: A model of pilot-abstractionsFull-text access may be available. Sign in or learn about subscription options.pp. 1-10
by Andre Luckow, Mark Santcroos, Andre Merzky, Ole Weidner, Pradeep Mantha, Shantenu Jha
BIGS: A framework for large-scale image processing and analysis over distributed and heterogeneous computing resourcesFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Raúl Ramos-Pollán, Fabio A. González, Juan C. Caicedo, Angel Cruz-Roa, Jorge E. Camargo, Jorge A. Vanegas, Santiago A. Pérez, Jose David Bermeo, Juan Sebastián Otálora, Paola K. Rozo, John E. Arévalo
An integrated science portal for collaborative compute and data intensive protein structure studiesFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Ian Stokes-Rees, Daniel O'Donovan, Peter Doherty, Meghan Porter-Mahoney, Piotr Sliz
Integration of modern data management practice with scientific workflowsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Neil E. B. Killeen, Jason M. Lohrey, Michael Farrell, Wilson Liu, Slavisa Garic, David Abramson, Hoang Nguyen, Gary Egan
Common motifs in scientific workflows: An empirical analysisFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Daniel Garijo, Pinar Alper, Khalid Belhajjame, Oscar Corcho, Yolanda Gil, Carole Goble
WorkWays: Interactive workflow-based science gatewaysFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Hoang Nguyen, David Abramson
Folding proteins at 500 ns/hour with Work QueueFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Badi' Abdul-Wahid, Li Yu, Dinesh Rajan, Haoyun Feng, Eric Darve, Douglas Thain, Jesus A. Izaguirre
WorkflowSim: A toolkit for simulating scientific workflows in distributed environmentsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Weiwei Chen, Ewa Deelman
Discovering drug targets for neglected diseases using a pharmacophylogenomic cloud workflowFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo Ogasawara, Marta Mattoso
MARISSA: MApReduce Implementation for Streaming Science ApplicationsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by E. Dede, Z. Fadika, J. Hartog, M. Govindaraju, L. Ramakrishnan, D. Gunter, R. Canon
A system for management of Computational Fluid Dynamics simulations for civil engineeringFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Peter Sempolinski, Douglas Thain, Daniel Wei, Ahsan Kareem
A framework to access handwritten information within large digitized paper collectionsFull-text access may be available. Sign in or learn about subscription options.pp. 1-10
by Liana Diesendruck, Luigi Marini, Rob Kooper, Mayank Kejriwal, Kenton McHenry
Service-based integration of human users in workflow-driven scientific experimentsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Dimka Karastoyanova, Dimitrios Dentsas, David Schumm, Mirko Sonntag, Lina Sun, Karolina Vukojevic
Towards semantically-enabled exploration and analysis of environmental ecosystemsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Ping Wang, Linyun Fu, Evan W. Patton, Deborah L. McGuinness, F. Joshua Dein, R. Sky Bristol
Flashes in a star stream: Automated classification of astronomical transient eventsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by S. G. Djorgovski, A. A. Mahabal, C. Donalek, M. J. Graham, A. J. Drake, B. Moghaddam, M. Turmon
Remote phenology: Applying machine learning to detect phenological patterns in a cerrado savannaFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Jurandy Almeida, Jefersson A. dos Santos, Bruna Alberton, Ricardo da S. Torres, Leonor Patricia C. Morellato
Towards HPC for the digital Humanities, Arts, and Social Sciences: Needs and challenges of adapting academic HPC for big dataFull-text access may be available. Sign in or learn about subscription options.pp. 1-6
by Kalev H. Leetaru
Happy or not: Generating topic-based emotional heatmaps for Culturomics using CyberGISFull-text access may be available. Sign in or learn about subscription options.pp. 1-6
by Eric Shook, Kalev Leetaru, Guofeng Cao, Anand Padmanabhan, Shaowen Wang
High-performance computing without commitment: SC2IT: A cloud computing interface that makes computational science available to non-specialistsFull-text access may be available. Sign in or learn about subscription options.pp. 1-6
by Kevin Jorissen, William Johnson, Fernando D. Vila, John J. Rehr
Lessons learned from Galaxy, a Web-based platform for high-throughput genomic analysesFull-text access may be available. Sign in or learn about subscription options.pp. 1-6
by Jeremy Goecks, The Galaxy Team, Anton Nekrutenko, James Taylor
High-performance data management for genome sequencing centers using Globus Online: A case studyFull-text access may be available. Sign in or learn about subscription options.pp. 1-6
by Dinanath Sulakhe, Rajkumar Kettimuthu, Utpal Dave
FRED Navigator: An interactive system for visualizing results from large-scale epidemic simulationsFull-text access may be available. Sign in or learn about subscription options.pp. 1-5
by Jack Paparian, Shawn Brown, Donald Burke, John Grefenstette
Digitization and search: A non-traditional use of HPCFull-text access may be available. Sign in or learn about subscription options.pp. 1-6
by Liana Diesendruck, Luigi Marini, Rob Kooper, Mayank Kejriwal, Kenton McHenry
Large Scale Video Analytics: On-demand, iterative inquiry for moving image researchFull-text access may be available. Sign in or learn about subscription options.pp. 1-5
by Virginia Kuhn, Ritu Arora, Alan Craig, Kevin Franklin, Michael Simeone, Dave Bock, Luigi Marini
Incorporating circulation data in relevancy rankings for search algorithms in library collectionsFull-text access may be available. Sign in or learn about subscription options.pp. 1-6
by Harriett E. Green, Kirk Hess, Richard Hislop
Overview of the TriBITS lifecycle model: A Lean/Agile software lifecycle model for research-based computational science and engineering softwareFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Roscoe A. Bartlett, Michael A. Heroux, James M. Willenbring
IPOL: Reviewed publication and public testing of research softwareFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Nicolas Limare, Laurent Oudre, Pascal Getreuer
On realizing the concept study ScienceSoft of the European Middleware Initiative: Open Software for Open ScienceFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Alberto Di Meglio, Florida Estrella, Morris Riedel
ExSciTecH: Expanding volunteer computing to Explore Science, Technology, and HealthFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by M. Matheny, S. Schlachter, L. M. Crouse, E. T. Kimmel, T. Estrada, M. Schumann, R. Armen, G. Zoppetti, M. Taufer
Experiences in the design and implementation of a Social Cloud for Volunteer ComputingFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Ryan Chard, Kris Bubendorfer, Kyle Chard
A satellite data portal developed for crowdsourcing data analysis and interpretationFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Zhenghui Hu, Wenjun Wu
g-Social: Enhancing integrated e-science tools with Social Networking functionalityFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Andriani Stylianou, Nicholas Loulloudes, Marios D. Dikaiakos
RunMyCode.org: A novel dissemination and collaboration platform for executing published computational resultsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Victoria Stodden, Christophe Hurlin, Christophe Pérignon
Towards a quantitative academic internationalization assessment of Brazilian research groupsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Evelyn Perez-Cervantes, Jesús P. Mena-Chalco, Roberto M. Cesar-Jr
Towards the gamification of well-being measuresFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Margeret Hall, Steven O. Kimbrough, Christian Haas, Christof Weinhardt, Simon Caton
Enabling large genomic data transfers using nation-wide and international dynamic lightpathsFull-text access may be available. Sign in or learn about subscription options.pp. 1-2
by Jan Bot, Migiel de Vos, Sander Boele, Marcel Reinders, Joost Kok
Pilot abstractions for compute, data, and networkFull-text access may be available. Sign in or learn about subscription options.pp. 1-2
by Mark Santcroos, Silvia Delgado Olabarriaga, Daniel S. Katz, Shantenu Jha
Verification and user experience of high data rate bandwidth-on-demand networksFull-text access may be available. Sign in or learn about subscription options.pp. 1-2
by Jimmy Cullen, Richard Hughes-Jones, Ralph Spencer
Dynamic network provisioning for data intensive applications in the cloudFull-text access may be available. Sign in or learn about subscription options.pp. 1-2
by Paul Ruth, Anirban Mandal, Yufeng Xin, Ilia Baldine, Chris Heerman, Jeff Chase
Efficient data transfer protocols for big dataFull-text access may be available. Sign in or learn about subscription options.pp. 1-9
by Brian Tierney, Ezra Kissel, Martin Swany, Eric Pouyoul
Velo and REXAN — Integrated data management and high speed analysis for experimental facilitiesFull-text access may be available. Sign in or learn about subscription options.pp. 1-9
by Kerstin Kleese van Dam, James Carson, Abigail Corrigan, Daniel Einstein, Zoe Guillen, Brandi Heath, Andrew Kuprat, Ingela Lanekoff, Carina Lansing, Julia Laskin, Dongsheng Li, Yan Liu, Matthew Marshall, Erin Miller, Galya Orr, Paulo Pinheiro da Silva, Seun Ryu, Craig Szymanski, Mathew Thomas
X-ray imaging software tools for HPC clusters and the CloudFull-text access may be available. Sign in or learn about subscription options.pp. 1-7
by Darren Thompson, Alex Khassapov, Yakov Nesterets, Timur Gureyev, John Taylor
eResearch environment for remote instrumentation: VBL, RLI, VisLabl & 2Full-text access may be available. Sign in or learn about subscription options.pp. 1-2
by Chris Myers, Michael D'Silva
GridFTP based real-time data movement architecture for x-ray photon correlation spectroscopy at the Advanced Photon SourceFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by S. Narayanan, T. J. Madden, A. R. Sandy, Raj Kettimuthu, Michael Link
From scripts towards provenance inferenceFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Mohammad Rezwanul Huq, Peter M. G. Apers, Andreas Wombacher, Yoshihide Wada, Ludovicus P. H. van Beek
Data intensive science at synchrotron based 3D x-ray imaging facilitiesFull-text access may be available. Sign in or learn about subscription options.pp. 1-3
by Francesco De Carlo, Xianghui Xiao, Kamel Fezzaa, Steve Wang, Nicholas Schwarz, Chris Jacobsen, Nikhilesh Chawla, Florian Fusseis
IRMIS: The care and feeding of a generalized relatively relational database for accelerator components with a connection to the real time EPICS Input output controllersFull-text access may be available. Sign in or learn about subscription options.pp. 1-3
by Richard Farnsworth, Scott Benes
Web applications for experimental control at CLSFull-text access may be available. Sign in or learn about subscription options.pp. 1-4
by Dong Liu, Dylan Maxwell, Elder Matias
The Earth System Grid Federation: An open infrastructure for access to distributed geospatial dataFull-text access may be available. Sign in or learn about subscription options.pp. 1-10
by Luca Cinquini, Daniel Crichton, Chris Mattmann, John Harney, Galen Shipman, Feiyi Wang, Rachana Ananthakrishnan, Neill Miller, Sebastian Denvil, Mark Morgan, Zed Pobre, Gavin M. Bell, Bob Drach, Dean Williams, Philip Kershaw, Stephen Pascoe, Estanislao Gonzalez, Sandro Fiore, Roland Schweitzer
Automated data verification in a large-scale citizen science project: A case studyFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Jun Yu, Steve Kelling, Jeff Gerbracht, Weng-Keen Wong
Partial replica selection for spatial datasetsFull-text access may be available. Sign in or learn about subscription options.pp. 1-10
by Yun Tian, Philip J. Rhodes
Image retrieval in the unstructured data management system AUDRFull-text access may be available. Sign in or learn about subscription options.pp. 1-7
by Junwu Luo, Bo Lang, Chao Tian, Danchen Zhang
Adaptive sampling of streaming signalsFull-text access may be available. Sign in or learn about subscription options.pp. 1-7
by Tristan A. Wietsma, Barbara S. Minsker
Enabling scientific data sharing and re-useFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by R. Darby, S. Lambert, B. Matthews, M. Wilson, K. Gitmans, S. Dallmeier-Tiessen, S. Mele, J. Suhonen
Temporal representation for scientific data provenanceFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Peng Chen, Beth Plale, Mehmet S. Aktas
Collaborative information management in scientific research processesFull-text access may be available. Sign in or learn about subscription options.pp. 1-7
by Shirley Crompton, Brian Matthews, Erica Yang, Cameron Neylon, Simon Coles
A new optimization phase for scientific workflow management systemsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Sonja Holl, Olav Zimmermann, Martin Hofmann-Apitius
Provenance analysis: Towards quality provenanceFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by You-Wei Cheah, Beth Plale
A data-driven urban research environment for AustraliaFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Richard O. Sinnott, Christopher Bayliss, Gerson Galang, Phillip Greenwood, George Koetsier, Damien Mannix, Luca Morandini, Marcos Nino-Ruiz, Chris Pettit, Martin Tomko, Muhammed Sarwar, Robert Stimson, William Voorsluys, Ivo Widjaja
Why workflows break — Understanding and combating decay in Taverna workflowsFull-text access may be available. Sign in or learn about subscription options.pp. 1-9
by Jun Zhao, Jose Manuel Gomez-Perez, Khalid Belhajjame, Graham Klyne, Esteban Garcia-Cuesta, Aleix Garrido, Kristina Hettne, Marco Roos, David De Roure, Carole Goble
Using Promethee methods for multi-criteria pull-based scheduling on DCIsFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Mircea Moca, Gilles Fedak
Fast confidential search for bio-medical data using Bloom filters and Homomorphic CryptographyFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Henning Perl, Yassene Mohammed, Michael Brenner, Matthew Smith
Data-oriented research for bioresource utilization: A case study to investigate water uptake in cellulose using Principal ComponentsFull-text access may be available. Sign in or learn about subscription options.pp. 1-7
by Liu Yi Ling, Carlos Driemeier, Roberto M. Cesar
Generalized representation and mapping for social-ecological data: Freeing data from the databaseFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Scott Jensen, Beth Plale, Xiaozhong Liu, Miao Chen, David Leake, Julie England
Cooperative VM migration for a virtualized HPC cluster with VMM-bypass I/O devicesFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Ryousei Takano, Hidemoto Nakada, Takahiro Hirofuchi, Yoshio Tanaka, Tomohiro Kudoh
Open Social based group access control framework for e-Science data infrastructureFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Hui Zhang, Wenjun Wu, Zhenan Li
MIM: A Minimum Information Model vocabulary and framework for Scientific Linked DataFull-text access may be available. Sign in or learn about subscription options.pp. 1-8
by Matthew Gamble, Carole Goble, Graham Klyne, Jun Zhao
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