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High Performance Computing and Grid in Asia Pacific Region, International Conference on

July 20 2004 to July 22 2004

Omiya Sonic City, Tokyo, Japan

ISBN: 0-7695-2138-X

Table of Contents

Message from the international advisory committee chairFreely available from IEEE.pp. xii-xii
HPCAsia2004 OrganizationFreely available from IEEE.pp. xvi-xvii
Session 1: Grid Middleware
A Failure Recovery Mechanism for Distributed Metadata Servers in DCFS2Full-text access may be available. Sign in or learn about subscription options.pp. 2-8
by Zhihua Fan, Jin Xiong, Jie Ma
Session 1: Grid Middleware
The Design and Implementation of a Fault-Tolerant RPC System: Ninf-CFull-text access may be available. Sign in or learn about subscription options.pp. 9-18
by Hidemoto Nakada, Satoshi Matsuoka, Yoshio Tanaka, Satoshi Sekiguchi
Session 1: Grid Middleware
Simplified Grid Computing through Spreadsheets and NetSolveFull-text access may be available. Sign in or learn about subscription options.pp. 19-24
by David Abramson, Jack Dongarra, Eric Meek, Paul Roe, Zhiao Shi
Session 2: Grid Portal
GridSpeed: A Web-based Grid Portal Generation ServerFull-text access may be available. Sign in or learn about subscription options.pp. 26-33
by Toyotaro Suzumura, Satoshi Matsuoka, Hidemoto Nakada, Henri Casanova
Session 2: Grid Portal
Grid PSE Builder: A Framework for Building Web-based Distributed PSE on GridFull-text access may be available. Sign in or learn about subscription options.pp. 34-41
by Motonori Hirano, Naotaka Yamamoto, Hiroshi Takemiya, Yoshio Tanaka, Satoshi Itoh, Satoshi Sekiguchi
Session 3: Grid Tools
Relis-G: Remote Library Install System for Computational GridsFull-text access may be available. Sign in or learn about subscription options.pp. 44-53
by Hiromasa Watanabe, Hiroki Honda, Toshitsugu Yuba, Yoshio Tanaka, Mitsuhisa Sato
Session 3: Grid Tools
Performance Evaluation in Computational Grid EnvironmentsFull-text access may be available. Sign in or learn about subscription options.pp. 54-62
by Liang Peng, Simon See, Yueqin Jiang, Jie Song, Appie Stoelwinder, Hoon Kang Neo
Session 3: Grid Tools
An OGSI-compliant Grid Information Service - Its Architecture and Performance StudyFull-text access may be available. Sign in or learn about subscription options.pp. 63-71
by Tianyi Zang, Wei Jie, Terence Hung, Zhou Lei, Stephen J. Turner, Wentong Cai, Ming Zhu, Constantine Katsinis
Session 4: P2P and Grid
A Framework for Automatic and Secure Cycle StealingFull-text access may be available. Sign in or learn about subscription options.pp. 74-80
by Wayne Kelly, Paul Roe
Session 4: P2P and Grid
A Parallel Distributed Application of the Wireless Sensor NetworkFull-text access may be available. Sign in or learn about subscription options.pp. 81-88
by A. I. Khan, M. Isreb, R. S. Spindler
Session 4: P2P and Grid
GridView: A Dynamic and Visual Grid Monitoring SystemFull-text access may be available. Sign in or learn about subscription options.pp. 89-92
by Ni Guangbao, Ma Jie, Li Bo
Session 4: P2P and Grid
Web-published Data Searching System for GRID EnvironmentFull-text access may be available. Sign in or learn about subscription options.pp. 93-96
by Sangkeon Lee, Seogchan Hwang, Jaeyoung Choi, Hyeongwoo Park
Session 5: Communication Layer
The Parallel Communication Protocol in BCL-4Full-text access may be available. Sign in or learn about subscription options.pp. 98-103
by Xiaocheng Zhou, Zhigang Huo, Jie Ma, Dan Meng
Session 5: Communication Layer
PM/InfiniBand-FJ: A High Performance Communication Facility Using InfiniBand for Large Scale PC ClustersFull-text access may be available. Sign in or learn about subscription options.pp. 104-113
by Shinji Sumimoto, Akira Naruse, Kouichi Kumon, Kouji Hosoe, Toshiyuki Shimizu
Session 5: Communication Layer
Exploring Collective Communications on A Cluster of SMPsFull-text access may be available. Sign in or learn about subscription options.pp. 114-117
by Meng-Shiou Wu, Ricky A. Kendall, Srinivas Aluru
Session 6: MPI
Design, Implementation and Performance of Fault-Tolerant Message Passing Interface (MPI)Full-text access may be available. Sign in or learn about subscription options.pp. 120-129
by A. David Selvakumar, P. M. Sobha, G. C. Ravindra, R. Pitchiah
Session 6: MPI
DMLoader: a Scalable MPI Task Loader on Dawning SupercomputersFull-text access may be available. Sign in or learn about subscription options.pp. 130-135
by Bibo Tu, Taoying Liu, Dan Meng
Session 6: MPI
Implementation of an MPI-I/O Mechanism Using PVFS in Remote I/O to a PC ClusterFull-text access may be available. Sign in or learn about subscription options.pp. 136-139
by Yuichi Tsujita
Session 7: Numerical Algorithm
An Improvement of SAINV and RIF Preconditionings of CG Method by Double Dropping StrategyFull-text access may be available. Sign in or learn about subscription options.pp. 142-149
by Seiji Fujino, Yusuke Ikeda
Session 7: Numerical Algorithm
Preconditioned Iterative Linear Solvers for Unstructured Grids on the Earth SimulatorFull-text access may be available. Sign in or learn about subscription options.pp. 150-160
by Kengo Nakajima
Session 8: HPC Architecture
An Effective Instruction Fetch Policy for Simultaneous Multithreaded ProcessorsFull-text access may be available. Sign in or learn about subscription options.pp. 162-168
by Liqiang He, Zhiyong Liu
Session 8: HPC Architecture
Queue Processor Architecture for Novel Queue Computing Paradigm Based on Produced Order SchemeFull-text access may be available. Sign in or learn about subscription options.pp. 169-177
by Ben A. Abderazek, M. Arsenji, Soichi Shigeta, Tsutomu Yoshinaga, Masahiro Sowa
Session 8: HPC Architecture
Multi-Grain Remote Access Cache in NUMA SystemFull-text access may be available. Sign in or learn about subscription options.pp. 178-185
by Jong Wook Kwak, Cheol Hong Kim, Seong Tae Jhang, Chu Shik Jhon
Session 9: HPC Application (1)
Parallel Fast Algorithm for Large-scale Electromagnetic ScatteringFull-text access may be available. Sign in or learn about subscription options.pp. 188-194
by Fang Wu, Yaojiang Zhang, Zaw Zaw Oo, Erping Li
Session 9: HPC Application (1)
An Evaluation of Advanced Multi-Components Expansion Method of LBM on Parallel ComputerFull-text access may be available. Sign in or learn about subscription options.pp. 195-202
by Yuichi Hirokawa, Teruo Matsuzawa
Session 9: HPC Application (1)
Performance Study of Load Balancing Strategies for Simulators of Nanoscale Measurements of Material PropertiesFull-text access may be available. Sign in or learn about subscription options.pp. 203-209
by Yingwen Song, Satoshi Watanabe
Session 10: HPC Application (2)
Lattice Boltzmann Simulation and Its Concurrent Visualization on the SX-6 SupercomputerFull-text access may be available. Sign in or learn about subscription options.pp. 212-219
by T. Takei, J. Bernsdorf, N. Masuda, H. Takahara
Session 10: HPC Application (2)
Crossover of the Behavior of Surface Waves in a Vibrated Granular MaterialFull-text access may be available. Sign in or learn about subscription options.pp. 220-225
by Youngkyun Jung, Jysoo Lee
Session 10: HPC Application (2)
Scaling Evaluation of the Lattice Solid Model on the SGI Altix 3700Full-text access may be available. Sign in or learn about subscription options.pp. 226-233
by Shane Latham, Steffen Abe, Matt Davies
Session 11: HPC Application (3)
Lessons Learned from Porting Vector Computer Applications onto Non-Uniform Memory Access Scalar MachinesFull-text access may be available. Sign in or learn about subscription options.pp. 236-243
by Takao Hatazaki
Session 11: HPC Application (3)
Scripting High Performance Earth Systems Simulations on the SGI Altix 3700Full-text access may be available. Sign in or learn about subscription options.pp. 244-251
by Matt Davies, Lutz Gross, Hans M?hlhaus
Session 11: HPC Application (3)
Implementations and Performance of Nonlinear CG Methods by TAO on Dawning2000Full-text access may be available. Sign in or learn about subscription options.pp. 252-255
by Jian Wang, Xuebin Chi, Tongxiang Gu
Session 12: HPC Application (4)
A Parallel Semi-Coarsening Multigrid Algorithm for Solving the Reynolds-Averaged Navier-Stokes EquationsFull-text access may be available. Sign in or learn about subscription options.pp. 258-266
by Kiattisak Ngiamsoongnirn, Ekachai Juntasaro, Varangrat Juntasaro, Putchong Uthayopas
Session 12: HPC Application (4)
Development of a High-performance Domain-wise Parallel Direct Solver for Large-scale Structural AnalysisFull-text access may be available. Sign in or learn about subscription options.pp. 267-274
by Jeong Ho Kim, Chang Sung Lee, Seung Jo Kim
Session 12: HPC Application (4)
Simulation of Free Surface by Surface Capturing MethodFull-text access may be available. Sign in or learn about subscription options.pp. 275-278
by W. Y. Chang, L. C. Lee, H. C. Lien, R. J. Shih, W. F. Tsai, J. S. Lai, C. L. Yen
Session 13: Visualization
VIsualization for HPC Data - Large Terrain ModelFull-text access may be available. Sign in or learn about subscription options.pp. 280-284
by Bo-Yin Li, Horng-Shyang Liao, Charlie H. Chang, San-Liang Chu
Session 13: Visualization
Application of Virtual Reality in Ecological Farmland Navigating SystemFull-text access may be available. Sign in or learn about subscription options.pp. 285-288
by Chia-Chen Kuo, Yi-Haur Shiau, Chen-Pey Huang, Cherng-Yeu Shen, Whey-Fone Tsai
Session 13: Visualization
3D VR EngineFull-text access may be available. Sign in or learn about subscription options.pp. 289-292
by Horng-Shyang Liao, Bo-Yin Li, Charlie H. Chang, San-Liang Chu
Session 14: Scheduling (1)
Colored Petri Nets Based Modeling and Simulation of Mixed Workload Interaction in a Nondedicated ClusterFull-text access may be available. Sign in or learn about subscription options.pp. 294-303
by Adel Ben Mnaouer, Badriya Al-Riyami
Session 14: Scheduling (1)
Queuing Network Modeling of a Cluster-Based Parallel SystemFull-text access may be available. Sign in or learn about subscription options.pp. 304-307
by Bahman Javadi, Siavash Khorsandi, Mohammad K. Akbari
Session 15: Grid Application
A Method to Verify Originality of Sequences Secretly on Distributed Computing EnvironmentFull-text access may be available. Sign in or learn about subscription options.pp. 310-319
by Ken-ichi Kurata, Hiroshi Nakamura, Vincent Breton
Session 15: Grid Application
Implementation of Protein Tertiary Structure Prediction System with NetSolveFull-text access may be available. Sign in or learn about subscription options.pp. 320-327
by Yusuke Tanimura, Keiko Aoi, Tomoyuki Hiroyasu, Mitsunori Miki, Yuko Okamoto, Jack Dongarra
Session 15: Grid Application
The Integration and Application of the Computational Grid Structure in Flood Forecast SystemFull-text access may be available. Sign in or learn about subscription options.pp. 328-331
by Ho-Cheng Lien, Yi-Haur Shiau, Chen-Pey Huang, Jyh-Horng Wu, Whey-Fone Tsai
Session 16: Scheduling (2)
A Compensation-based Scheduling Scheme for Grid ComputingFull-text access may be available. Sign in or learn about subscription options.pp. 334-342
by Y. M. Teo, X. Wang, J. P. Gozali
Session 16: Scheduling (2)
The Impact of Local Priority Policies on Grid Scheduling Performance and an Adaptive Policy-based Grid Scheduling AlgorithmFull-text access may be available. Sign in or learn about subscription options.pp. 343-346
by Siraprapa Wiriyaprasit, Veera Muangsin
Session 16: Scheduling (2)
A Novel Algorithm for Mapping Parallel Applications in Computational Grid EnvironmentsFull-text access may be available. Sign in or learn about subscription options.pp. 347-350
by Panu Phinjaroenphan, Savitri Bevinakoppa
WS4: BioGrid Workshop
Drug Discovery Using Grid TechnologyFull-text access may be available. Sign in or learn about subscription options.pp. 352-356
by Michiaki Hamada, Yuichiro Inagaki, Hiroshi Chuman
WS4: BioGrid Workshop
A System Architecture Assisting User Trial-and-Error Process in in-silico Drug DesignFull-text access may be available. Sign in or learn about subscription options.pp. 357-364
by Takashi Maeno, Susumu Date, Yoshiyuki Kido, Ichiro Hasegawa, Shinji Shimojo
WS4: BioGrid Workshop
Development of a Database System for Drug Discovery by Employing Grid TechnologyFull-text access may be available. Sign in or learn about subscription options.pp. 365-369
by Masato Kitajima, Yukako Tohsato, Takahiro Kosaka, Kazuto Yamazaki, Reiji Teramoto, Susumu Date, Shinji Shimojo, Hideo Matsuda
WS4: BioGrid Workshop
The Application of Grid Technology in Systems Biology: Parameter EstimationFull-text access may be available. Sign in or learn about subscription options.pp. 370-377
by Pawan K. Dhar
WS4: BioGrid Workshop
GBTK: A Toolkit for Grid Implementation of BLASTFull-text access may be available. Sign in or learn about subscription options.pp. 378-382
by M. Kumar Satish, Rajendra R. Joshi
WS4: BioGrid Workshop
iGridPortal and Biological ProblemsFull-text access may be available. Sign in or learn about subscription options.pp. 383-386
by Hoang Le Minh, Vo Duc Cam Hai, Nguyen Thi Thanh Nhan, Tran Linh Thuoc, Do Anh Tuan, Vo Cam Quy
WS1: Workshop on Computational Fluid Dynamics and Computational Mechanics for the New Century
On Emerging Trends and Future Challenges in Aerospace CFD using the CeNSS System of JAXA NS-IIIFull-text access may be available. Sign in or learn about subscription options.pp. 388-395
by Yuichi Matsuo
WS1: Workshop on Computational Fluid Dynamics and Computational Mechanics for the New Century
Multi-Objective Optimization for Aerodynamic Designs by Using ARMOGAsFull-text access may be available. Sign in or learn about subscription options.pp. 396-403
by Shigeru Obayashi, Daisuke Sasaki
WS1: Workshop on Computational Fluid Dynamics and Computational Mechanics for the New Century
Large Scale Finite Element Simulation and Modeling for Wind Flow and RainfallFull-text access may be available. Sign in or learn about subscription options.pp. 404-410
by Kazuo Kashiyama
WS1: Workshop on Computational Fluid Dynamics and Computational Mechanics for the New Century
Computational Approach to Hemodynamics in Femoral Bypass GraftFull-text access may be available. Sign in or learn about subscription options.pp. 411-417
by Teruo Matsuzawa, Aike Qiao
WS1: Workshop on Computational Fluid Dynamics and Computational Mechanics for the New Century
An Application of the Parallel Processing Computer to a Nuclear Disaster Prevention Support SystemFull-text access may be available. Sign in or learn about subscription options.pp. 419-426
by Shigehiro Nukatsuka, Osami Watanabe, Tomohiro Hara, Takeshi Adachi
WS3: Workshop on Reconfigurable Systems for HPC
Reconfigurable HPC: Torpedoed by Deficits in Education?Full-text access may be available. Sign in or learn about subscription options.pp. 428-429
by Reiner Hartenstein
WS3: Workshop on Reconfigurable Systems for HPC
Design Considerations of a Meta-Level Optimizing Computer SystemFull-text access may be available. Sign in or learn about subscription options.pp. 430-431
by Fumihito Furukawa, Moriyuki Saito, Gaku Ishihara, Kanemitsu Ootsu, Takashi Yokota, Takanobu Baba
WS3: Workshop on Reconfigurable Systems for HPC
Reconfigurable Neural Network Using DAP/DNAFull-text access may be available. Sign in or learn about subscription options.pp. 432-433
by Yunqing Yu, Kazuaki Murakami
WS3: Workshop on Reconfigurable Systems for HPC
Outline of the Ultra Fine Grained Parallel Processing by FPGAFull-text access may be available. Sign in or learn about subscription options.pp. 434-441
by Y. Inoguchi
WS3: Workshop on Reconfigurable Systems for HPC
SysteMorph: Dynamic/Online/Adaptive System-Level Optimization for SoCFull-text access may be available. Sign in or learn about subscription options.pp. 442-447
by Norifumi Yoshimatsu, Makoto Yoshida, Takeshi Soga, Makoto Shuto, Yasuyuki Tanoue, Yosuke Fujii, Kazuhito Eshima, Takanori Hayashida, Kazuaki Murakami
WS3: Workshop on Reconfigurable Systems for HPC
A Coarse-Grained Reconfigurable Architecture Supporting Flexible ExecutionFull-text access may be available. Sign in or learn about subscription options.pp. 448-449
by Tetsuo Hironaka, Takeshi Fukuda, Yoshito Goto, Kazuya Tanigawa, Takashi Kawasaki, Akira Kojima
WS2: Myrinet Users Group: Special Interest of PC Cluster Advanced Technologies and Experiences
Myrinet eXpress (MX): Is Your Interconnect Smart?Full-text access may be available. Sign in or learn about subscription options.pp. 452-452
by Patrick Geoffray
WS2: Myrinet Users Group: Special Interest of PC Cluster Advanced Technologies and Experiences
AIST Super Cluster: A Large Scale Heterogeneous Cluster with 14.6TFLOPS Peak PerformanceFull-text access may be available. Sign in or learn about subscription options.pp. 453-453
by Tomohiro Kudoh
WS2: Myrinet Users Group: Special Interest of PC Cluster Advanced Technologies and Experiences
Pink: A 1024-node Single-System Image Linux ClusterFull-text access may be available. Sign in or learn about subscription options.pp. 454-461
by Gregory R. Watson, Matthew J. Sottile, Ronald G. Minnich, Sung-Eun Choi, Erik A. Hendriks
WS2: Myrinet Users Group: Special Interest of PC Cluster Advanced Technologies and Experiences
Fast Mapping on Myrinet NetworksFull-text access may be available. Sign in or learn about subscription options.pp. 462-466
by Erik A. Hendriks
WS2: Myrinet Users Group: Special Interest of PC Cluster Advanced Technologies and Experiences
High-performance Neural Network Training on a Computational ClusterFull-text access may be available. Sign in or learn about subscription options.pp. 467-472
by J. Lu, D. Goldman, M. Yang, N. Bourbakis
WS2: Myrinet Users Group: Special Interest of PC Cluster Advanced Technologies and Experiences
Comparative Analysis of High-Performance Clusters' Communication Environments Using HPL TestFull-text access may be available. Sign in or learn about subscription options.pp. 473-476
by Sergey Gaissaryan, Arutyun Avetisyan, Oleg Samovarov, Dmitry Grushin
WS6: Simulation Results on the Earth Simulator
Model Development for the Global Warming Prediction by using the Earth SimulatorFull-text access may be available. Sign in or learn about subscription options.pp. 480-487
by Akimasa Sumi, Masahide Kimoto, Seita Emori, Minoru Nozawa, Hiroyasu Hasumi
WS6: Simulation Results on the Earth Simulator
Development of Nonhydrostatic Coupled Ocean-Atmosphere Simulation Code on the Earth SimulatorFull-text access may be available. Sign in or learn about subscription options.pp. 487-494
by Keiko Takahashi, Xindong Peng, Kenji Komine, Mitsuru Ohdaira, Yosuke Abe, Takeshi Sugimura, Keisuke Hirai, Koji Goto, Hiromitsu Fuchigami, Masayuki Yamada, Kunihiko Watanabe
WS6: Simulation Results on the Earth Simulator
Simulations of Global Seismic Wave Propagation for 3-D Earth ModelFull-text access may be available. Sign in or learn about subscription options.pp. 496-501
by Seiji Tsuboi, Dimitri Komatitsch, Chen Ji, Jeroen Tromp
WS6: Simulation Results on the Earth Simulator
Large Scale Simulations for Carbon NanotubesFull-text access may be available. Sign in or learn about subscription options.pp. 502-509
by Syogo Tejima, Noejung Park, Yoshiyuki Miyamoto, Kazuo Minami, Mikio Iizuka, Hisashi Nakamura, David Tomanek
WS6: Simulation Results on the Earth Simulator
Numerical Simulations of the Internal Flow of Rocket EnginesFull-text access may be available. Sign in or learn about subscription options.pp. 510-517
by Taro Shimizu, Nobuhiro Yamanishi, Chisachi Kato
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