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SC Conference

Nov. 12 2005 to Nov. 18 2005

Seattle, WA

ISBN: 1-59593-061-2

Table of Contents

Session 10: High End Systems Issues
Partitioning Hardware and Software for Reconfigurable Supercomputing Applications: A Case StudyFull-text access may be available. Sign in or learn about subscription options.pp. 27
Session 12: Power and Programmability
Parallel Programmer Productivity: A Case Study of Novice Parallel ProgrammersFull-text access may be available. Sign in or learn about subscription options.pp. 35
by M.V. Zelkowitz, J.K. Hollingsworth, V. Basili, S. Asgari, F. Shull, J. Carver, L. Hochstein
ACM/IEEE SC 2005 Conference - Table of contentsFreely available from IEEE.pp. v,vi,vii
Session 1: High End Computing Technologies
A Power-Aware Run-Time System for High-Performance ComputingFull-text access may be available. Sign in or learn about subscription options.pp. 1
by Chung-hsing Hsu, Wu-chun Feng
Session 1: High End Computing Technologies
High Performance Linear Algebra Operations on Reconfigurable SystemsFull-text access may be available. Sign in or learn about subscription options.pp. 2
by Ling Zhuo, Viktor K. Prasanna
Session 1: High End Computing Technologies
LU-GPU: Efficient Algorithms for Solving Dense Linear Systems on Graphics HardwareFull-text access may be available. Sign in or learn about subscription options.pp. 3
by Nico Galoppo, Naga K. Govindaraju, Michael Henson, Dinesh Manocha
Session 2: Applications
Scalable Parallel Octree Meshing for TeraScale ApplicationsFull-text access may be available. Sign in or learn about subscription options.pp. 4
by TIANKAI TU, DAVID R. O'HALLARON, OMAR GHATTAS
Session 2: Applications
Is 1.7 x 10^10 Unknowns the Largest Finite Element System that Can Be Solved Today?Full-text access may be available. Sign in or learn about subscription options.pp. 5
by B Bergen, F. Hulsemann, U. Rude
Session 2: Applications
Intelligent Feature Extraction and Tracking for Visualizing Large-Scale 4D Flow SimulationsFull-text access may be available. Sign in or learn about subscription options.pp. 6
by Fan-Yin Tzeng, Kwan-Liu Ma
Session 3: Cluster Environments
The MHETA Execution Model for Heterogeneous ClustersFull-text access may be available. Sign in or learn about subscription options.pp. 7
by Mario Nakazawa, David K. Lowenthal, Wendou Zhou
Session 3: Cluster Environments
VSched: Mixing Batch And Interactive Virtual Machines Using Periodic Real-time SchedulingFull-text access may be available. Sign in or learn about subscription options.pp. 8
by Bin Lin, Peter A. Dinda
Session 3: Cluster Environments
Transparent, Incremental Checkpointing at Kernel Level: a Foundation for Fault Tolerance for Parallel ComputersFull-text access may be available. Sign in or learn about subscription options.pp. 9
by Roberto Gioiosa, Jose Carlos Sancho, Song Jiang, Fabrizio Petrini
Session 4: Bioscience
Full Electron Calculation Beyond 20,000 Atoms: Ground Electronic State of Photosynthetic ProteinsFull-text access may be available. Sign in or learn about subscription options.pp. 10
by TSUTOMU IKEGAMI, TOYOKAZU ISHIDA, DMITRI G. FEDOROV, KAZUO KITAURA, YUICHI INADOMI, HIROAKI UMEDA, MITSUO YOKOKAWA, SATOSHI SEKIGUCHI
Session 4: Bioscience
ClawHMMER: A Streaming HMMer-Search ImplementatioFull-text access may be available. Sign in or learn about subscription options.pp. 11
by Daniel Reiter Horn, Mike Houston, Pat Hanrahan
Session 4: Bioscience
Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems BiologyFull-text access may be available. Sign in or learn about subscription options.pp. 12
by Yun Zhang, Faisal N. Abu-Khzam, Nicole E. Baldwin, Elissa J. Chesler, Michael A. Langston, Nagiza F. Samatova
Session 5: Optimizing Compilers
Integrated Loop Optimizations for Data Locality Enhancement of Tensor Contraction ExpressionsFull-text access may be available. Sign in or learn about subscription options.pp. 13
by Swarup Kumar Sahoo, Sriram Krishnamoorthy, Rajkiran Panuganti, P. Sadayappan
Session 5: Optimizing Compilers
Automatic Tuning of Inlining HeuristicsFull-text access may be available. Sign in or learn about subscription options.pp. 14
by John Cavazos, Michael F.P. O'Boyle
Session 5: Optimizing Compilers
Making Sequential Consistency Practical in TitaniumFull-text access may be available. Sign in or learn about subscription options.pp. 15
by Amir Kamil, Jimmy Su, Katherine Yelick
Session 6: Optical-Electronic Networking
On the Feasibility of Optical Circuit Switching for High Performance Computing SystemsFull-text access may be available. Sign in or learn about subscription options.pp. 16
by Kevin J. Barker, Alan Benner, Ray Hoare, Adolfy Hoisie, Alex K. Jones, Darren K. Kerbyson, Dan Li, Rami Melhem, Ram Rajamony, Eugen Schenfeld, Shuyi Shao, Craig Stunkel, Peter Walker
Session 6: Optical-Electronic Networking
Analyzing Ultra-Scale Application Communication Requirements for a Reconfigurable Hybrid InterconnectFull-text access may be available. Sign in or learn about subscription options.pp. 17
by John Shalf, Shoaib Kamil, Leonid Oliker, David Skinner
Session 6: Optical-Electronic Networking
Viable opto-electronic HPC interconnect fabricsFull-text access may be available. Sign in or learn about subscription options.pp. 18
by Ronald Luijten, Cyriel Minkenberg, Roe Hemenway, Michael Sauer, Richard Grzybowski
Session 7: Web Services
A Benchmark Suite for SOAP-based Communication in Grid Web ServicesFull-text access may be available. Sign in or learn about subscription options.pp. 19
by Michael R. Head, Madhusudhan Govindaraju, Aleksander Slominski, Pu Liu, Nayef Abu-Ghazaleh, Robert van Engelen, Kenneth Chiu, Michael J. Lewis
Session 7: Web Services
Alternative Software Stacks for OGSA-based GridsFull-text access may be available. Sign in or learn about subscription options.pp. 20
by Marty Humphrey, Glenn Wasson, Yuliyan Kiryakov, Sang-Min Park, David Del Vecchio, Norm Beekwilder
Session 7: Web Services
Differential Deserialization for Optimized SOAP PerformanceFull-text access may be available. Sign in or learn about subscription options.pp. 21
by Nayef Abu-Ghazaleh, Michael J. Lewis
Session 8: Chemistry and Materials Science
Calibrating quantum chemistry: A multi-teraflop, parallel-vector, full-configuration interaction program for the Cray-X1Full-text access may be available. Sign in or learn about subscription options.pp. 22
by Zhengting Gan, Robert J. Harrison
Session 8: Chemistry and Materials Science
Multilevel Parallelism in Computational Chemistry using Common Component Architecture and Global ArraysFull-text access may be available. Sign in or learn about subscription options.pp. 23
by Manojkumar Krishnan, Yuri Alexeev, Theresa L. Windus, Jarek Nieplocha
Session 8: Chemistry and Materials Science
Large-Scale First-Principles Molecular Dynamics simulations on the BlueGene/L Platform using the Qbox codeFull-text access may be available. Sign in or learn about subscription options.pp. 24
by François Gygi, Robert K. Yates, Juergen Lorenz, Erik W. Draeger, Franz Franchetti, Christoph W. Ueberhuber, Bronis R. de Supinski, Stefan Kral, John A. Gunnels, James C. Sexton
Session 9: System Performance Evaluation
A Scalable Distributed Parallel Breadth-First Search Algorithm on BlueGene/LFull-text access may be available. Sign in or learn about subscription options.pp. 25
by Andy Yoo, Edmond Chow, Keith Henderson, William McLendon, Bruce Hendrickson, Umit Catalyurek
Session 9: System Performance Evaluation
An Application-Based Performance Characterization of the Columbia SuperclusterFull-text access may be available. Sign in or learn about subscription options.pp. 26
by Rupak Biswas, M. Jahed Djomehri, Robert Hood, Haoqiang Jin, Cetin Kiris, Subhash Saini
Session 10: High End Systems Issues
MegaProto: 1 TFlops/10kW Rack Is Feasible Even with Only Commodity TechnologyFull-text access may be available. Sign in or learn about subscription options.pp. 28
by Hiroshi Nakashima, Hiroshi Nakamura, Mitsuhisa Sato, Taisuke Boku, Satoshi Matsuoka, Satoshi Matsuoka, Daisuke Takahashi, Yoshihiko Hotta
Session 10: High End Systems Issues
Fault Tolerance Techniques for the Merrimac Streaming SupercomputerFull-text access may be available. Sign in or learn about subscription options.pp. 29
by Mattan Erez, Nuwan Jayasena, Timothy J. Knight, William J. Dally
Session 11: MPI and Network Transport
SCTP versus TCP for MPIFull-text access may be available. Sign in or learn about subscription options.pp. 30
by Humaira Kamal, Brad Penoff, Alan Wagner
Session 11: MPI and Network Transport
Supporting Configurable Congestion Control in Data Transport ServicesFull-text access may be available. Sign in or learn about subscription options.pp. 31
by Yunhong Gu, Robert L. Grossman
Session 11: MPI and Network Transport
Design and Implementation of Multiple Fault-Tolerant MPI over Myrinet (M^3)Full-text access may be available. Sign in or learn about subscription options.pp. 32
by Hyungsoo Jung, Dongin Shin, Hyuck Han, Jai W. Kim, Heon Y. Yeom, Jongsuk Lee
Balanced Multicasting: High-throughput Communication for Grid ApplicationsFull-text access may be available. Sign in or learn about subscription options.pp. 46
by M. den Burger, T. Kielmann, H.E. Bal
Session 12: Power and Programmability
Just In Time Dynamic Voltage Scaling: Exploiting Inter-Node Slack to Save Energy in MPI ProgramsFull-text access may be available. Sign in or learn about subscription options.pp. 33
by Nandini Kappiah, Vincent W. Freeh, David K. Lowenthal
Session 12: Power and Programmability
Performance-constrained Distributed DVS Scheduling for Scientific Applications on Power-aware ClustersFull-text access may be available. Sign in or learn about subscription options.pp. 34
by Rong Ge, Xizhou Feng, Kirk W. Cameron
Session 13: Scheduling
Profitable services in an uncertain worldFull-text access may be available. Sign in or learn about subscription options.pp. 36
by Florentina I. Popovici, John Wilkes
Session 13: Scheduling
Scheduling speculative tasks in a compute farmFull-text access may be available. Sign in or learn about subscription options.pp. 37
by David Petrou, Garth A. Gibson, Gregory R. Ganger
Session 13: Scheduling
DI-GRUBER: A Distributed Approach to Grid Resource BrokeringFull-text access may be available. Sign in or learn about subscription options.pp. 38
by Catalin Dumitrescu, Ioan Raicu, Ian Foster
Session 14: Performance Prediction and Analysis
Integrating Database Technology with Comparison-based Parallel Performance Diagnosis: The PerfTrack Performance Experiment Management ToolFull-text access may be available. Sign in or learn about subscription options.pp. 39
by Karen L. Karavanic, John May, Kathryn Mohror, Brian Miller, Kevin Huck, Rashawn Knapp, Brian Pugh
Session 14: Performance Prediction and Analysis
Cross-Platform Performance Prediction of Parallel Applications Using Partial ExecutionFull-text access may be available. Sign in or learn about subscription options.pp. 40
by Leo T. Yang, Xiaosong Ma, Frank Mueller
Session 14: Performance Prediction and Analysis
PerfExplorer: A Performance Data Mining Framework For Large-Scale Parallel ComputingFull-text access may be available. Sign in or learn about subscription options.pp. 41
by Kevin A. Huck, Allen D. Malony
Session 15: Large Data Applications
Optimized Data Loading for a Multi-Terabyte Sky Survey RepositoryFull-text access may be available. Sign in or learn about subscription options.pp. 42
by Y. Dora Cai, Ruth Aydt, Robert J. Brunner
Session 15: Large Data Applications
DYNAMIC DATA-DRIVEN INVERSION FOR TERASCALE SIMULATIONS: REAL-TIME IDENTIFICATION OF AIRBORNE CONTAMINANTSFull-text access may be available. Sign in or learn about subscription options.pp. 43
by VOLKAN AKCELIK, GEORGE BIROS, ANDREI DRAGANESCU, JUDITH HILL, OMAR GHATTAS, BART VAN BLOEMEN WAANDERS
Session 15: Large Data Applications
16.447 TFlops and 159-Billion-dimensional Exact-diagonalization for Trapped Fermion-Hubbard Model on the Earth SimulatorFull-text access may be available. Sign in or learn about subscription options.pp. 44
by Susumu Yamada, Toshiyuki Imamura, Masahiko Machida
Session 16: Collective and Group Communication
Performance Modeling and Tuning Strategies of Mixed Mode Collective CommunicationsFull-text access may be available. Sign in or learn about subscription options.pp. 45
by Meng-Shiou Wu, Ricky A. Kendall, Kyle Wright, Zhao Zhang
Session 16: Collective and Group Communication
Optimizing All-to-All Collective Communication by Exploiting Concurrency in Modern NetworksFull-text access may be available. Sign in or learn about subscription options.pp. 46
by Vinod Tipparaju, Jarek Nieplocha
Session 17: Performance Characterization
How Well Can Simple Metrics Represent the Performance of HPC Applications?Full-text access may be available. Sign in or learn about subscription options.pp. 48
by Laura C. Carrington, Roy L. Campbell, Larry P. Davis
Session 17: Performance Characterization
Apex-Map: A Global Data Access Benchmark to Analyze HPC Systems and Parallel Programming ParadigmsFull-text access may be available. Sign in or learn about subscription options.pp. 49
by Erich Strohmaier, Hongzhang Shan
Session 17: Performance Characterization
Quantifying Locality In The Memory Access Patterns of HPC ApplicationsFull-text access may be available. Sign in or learn about subscription options.pp. 50
by Jonathan Weinberg, Michael O. McCracken, Erich Strohmaier, Allan Snavely
Session 18: Grid Infrastructure
Identity Boxing: A New Technique for Consistent Global IdentityFull-text access may be available. Sign in or learn about subscription options.pp. 51
by Douglas Thain
Session 18: Grid Infrastructure
GLARE: A Grid Activity Registration, Deployment and Provisioning FrameworkFull-text access may be available. Sign in or learn about subscription options.pp. 52
by Mumtaz Siddiqui, Alex Villazon, Jurgen Hofer, Thomas Fahringer
Session 18: Grid Infrastructure
Massive High-Performance Global File Systems for Grid computingFull-text access may be available. Sign in or learn about subscription options.pp. 53
by Phil Andrews, Patricia Kovatch, Christopher Jordan
Session 19: Storage and Data
The Globus Striped GridFTP Framework and ServerFull-text access may be available. Sign in or learn about subscription options.pp. 54
by William Allcock, John Bresnahan, Rajkumar Kettimuthu, Michael Link, Catalin Dumitrescu, Ioan Raicu, Ian Foster
Session 19: Storage and Data
Separating Abstractions from Resources in a Tactical Storage SystemFull-text access may be available. Sign in or learn about subscription options.pp. 55
by Douglas Thain, Sander Klous, Justin Wozniak, Paul Brenner, Aaron Striegel, Jesus Izaguirre
Session 19: Storage and Data
FreeLoader: Scavenging Desktop Storage Resources for Scientific DataFull-text access may be available. Sign in or learn about subscription options.pp. 56
by Sudharshan S. Vazhkudai, Xiaosong Ma, Vincent W. Freeh, Jonathan W. Strickland, Nandan Tammineedi, Stephen L. Scott
Session 20: Performance Optimization
Parallel Parameter Tuning for Applications with Performance VariabilityFull-text access may be available. Sign in or learn about subscription options.pp. 57-57
by V. Tabatabaee, A. Tiwari, J.K. Hollingsworth
Session 20: Performance Optimization
Transformations to Parallel Codes for Communication-Computation OverlapFull-text access may be available. Sign in or learn about subscription options.pp. 58
by Anthony Danalis, Ki-Yong Kim, Lori Pollock, Martin Swany
Session 20: Performance Optimization
Using Dynamic Tracing Sampling to Measure Long Running ProgramsFull-text access may be available. Sign in or learn about subscription options.pp. 59
by Jeffrey Odom, Jeffrey K. Hollingsworth, Luiz DeRose, Kattamuri Ekanadham, Simone Sbaraglia
Session 21: High End Computing Applications
Tera-Scalable Algorithms for Variable-Density Elliptic Hydrodynamics with Spectral AccuracyFull-text access may be available. Sign in or learn about subscription options.pp. 60
by Andrew W. Cook, William H. Cabot, Peter L. Williams, Brian J. Miller, Bronis R. de Supinski, Robert K. Yates, Michael L. Welcome
Session 21: High End Computing Applications
High Resolution Aerospace Applications using the NASA Columbia SupercomputerFull-text access may be available. Sign in or learn about subscription options.pp. 61
by Dimitri J. Mavriplis, Michael J. Aftosmis, Marsha Berger
Session 21: High End Computing Applications
Leading Computational Methods on Scalar and Vector HEC PlatformsFull-text access may be available. Sign in or learn about subscription options.pp. 62
by Leonid Oliker, Jonathan Carter, Michael Wehner, Andrew Canning, Stephane Ethier, Art Mirin, David Parks, Patrick Worley, Shigemune Kitawaki, Yoshinori Tsuda
Towards a Technology and Architecture Hybrid?Freely available from IEEE.pp. 63-63
by T. Sterling
Panel: Superconducting Technology Assessment Position Papers
Superconductor Technology for High-End Computing System Issues and Technology RoadmapFreely available from IEEE.pp. 64-64
by A.H. Silver
Panel: Superconducting Technology Assessment Position Papers
Opportunities, Challenges, and Projections for Superconductor RSFQ MicroprocessorsFreely available from IEEE.pp. 65-65
by M. Dorojevets
Panel: Superconducting Technology Assessment Position Papers
Cryogenic Memories for RSFQ Ultra-High-Speed ProcessorFreely available from IEEE.pp. 66-66
by T. Van Duzer
Panel: Superconducting Technology Assessment Position Papers
System Balance and Fast ClocksFull-text access may be available. Sign in or learn about subscription options.pp. 67
by Burton J. Smith
Analytics
Bridging the Macro and Micro: A Computing Intensive Earthquake Study Using Discovery NetFull-text access may be available. Sign in or learn about subscription options.pp. 68
by Y. Guo, J. G. Liu, M. Ghanem, K. Mish, V. Curcin, C. Haselwimmer, D. Sotiriou, K.K Muraleetharan, L. Taylor
Analytics
Real Time Change Detection and Alerts from Highway Traffic DataFull-text access may be available. Sign in or learn about subscription options.pp. 69
by Robert Grossman, Michal Sabala, Anushka Aanand, Steve Eick, Leland Wilkinson, Pei Zhang, John Chaves, Steve Vejcik, John Dillenburg, Peter Nelson, Doug Rorem, Javid Alimohideen, Jason Leigh, Mike Papka, Rick Stevens
Analytics
SPICE: Simulated Pore Interactive Computing EnvironmenFull-text access may be available. Sign in or learn about subscription options.pp. 70
by Shantenu Jha, Peter Coveney, Matt Harvey
Analytics
TERASCALE MUSIC MININGFull-text access may be available. Sign in or learn about subscription options.pp. 71
by J. Stephen Downie, Joe Futrel
Analytics
Network Traffic Analysis With Query Driven Visualization SC 2005 HPC Analytics ResultsFull-text access may be available. Sign in or learn about subscription options.pp. 72
by Kurt Stockinger, Kesheng Wu, Scott Campbell, Stephen Lau, Mike Fisk, Eugene Gavrilov, Alex Kent, Christopher E. Davis, Rick Olinger, Rob Young, Jim Prewett, Paul Weber, Thomas P. Caudell, E.Wes Bethel, Steve Smith
Analytics
Visualization of Large-Scale Unsteady Computational Fluid Dynamics DatasetsFull-text access may be available. Sign in or learn about subscription options.pp. 73
by EARL P.N. DUQUE, STEVE M. LEGENSKY
InfoStar Paper
An Adaptive Visual Analytics Platform for Mobile DevicesFull-text access may be available. Sign in or learn about subscription options.pp. 74
by Antonio Sanfilippo, Richard May, Gary Danielson, Bob Baddeley, Rick Riensche, Skip Kirby, Sharon Collins, Susan Thornton, Kenneth Washington, Matt Schrager, Jamie Van Randwyk, Bob Borchers, Doug Gatchell
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